YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B1AR_MOUSE, ADRB...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGALALGA SEPCNLSSAA PLPDGAATAA RLLVLASPPA SLLPPASEGS APLSQQWTAG  60
   61 MGLLVALIVL LIVVGNVLVI VAIAKTPRLQ TLTNLFIMSL ASADLVMGLL VVPFGATIVV 120
  121 WGRWEYGSFF CELWTSVDVL CVTASIETLC VIALDRYLAI TSPFRYQSLL TRARARALVC 180
  181 TVWAISALVS FLPILMHWWR AESDEARRCY NDPKCCDFVT NRAYAIASSV VSFYVPLCIM 240
  241 AFVYLRVFRE AQKQVKKIDS CERRFLGGPA RPPSPEPSPS PGPPRPADSL ANGRSSKRRP 300
  301 SRLVALREQK ALKTLGIIMG VFTLCWLPFF LANVVKAFHR DLVPDRLFVF FNWLGYANSA 360
  361 FNPIIYCRSP DFRKAFQRLL CCARRAACRR RAAHGDRPRA SGCLARAGPP PSPGAPSDDD 420
  421 DDDAGTTPPA RLLEPWTGCN GGTTTVDSDS SLDEPGRQGF SSESKV

Type	Start	End	Confidence
Cytoplasmic	1	26	0.46
Transmembrane Helix	27	42	0.45
Non-Cytoplasmic	43	58	0.85
Transmembrane Helix	59	83	0.89
Cytoplasmic	84	94	0.84
Transmembrane Helix	95	119	0.85
Non-Cytoplasmic	120	133	0.85
Transmembrane Helix	134	158	0.83
Cytoplasmic	159	174	0.94
Transmembrane Helix	175	196	0.90
Non-Cytoplasmic	197	225	0.93
Transmembrane Helix	226	248	0.90
Cytoplasmic	249	310	0.99
Transmembrane Helix	311	332	0.90
Non-Cytoplasmic	333	348	0.82
Transmembrane Helix	349	367	0.80
Cytoplasmic	368	466	0.84