YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOA1_MOUSE, SOAT...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	130	0.90
Transmembrane Helix	131	152	0.91
Non-Cytoplasmic	153	173	0.84
Transmembrane Helix	174	193	0.94
Cytoplasmic	194	206	0.75
Transmembrane Helix	207	235	0.78
Non-Cytoplasmic	236	309	0.63
Transmembrane Helix	310	331	0.89
Cytoplasmic	332	350	0.60
Transmembrane Helix	351	375	0.85
Non-Cytoplasmic	376	405	0.57
Transmembrane Helix	406	423	0.43
Cytoplasmic	424	433	0.76
Transmembrane Helix	434	454	0.84
Non-Cytoplasmic	455	459	0.69
Transmembrane Helix	460	480	0.93
Cytoplasmic	481	487	0.82
Transmembrane Helix	488	509	0.89
Non-Cytoplasmic	510	540	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRNRLSKS GENPEQDEAQ KNFMDTYRNG HITMKQLIAK KRLLAAEAEE LKPLFMKEVG  60
   61 CHFDDFVTNL IEKSASLDNG GCALTTFSIL EEMKKNHRAK DLRAPPEQGK IFISRQSLLD 120
  121 ELFEVDHIRT IYHMFIALLI LFVLSTIVVD YIDEGRLVLE FNLLAYAFGK FPTVIWTWWA 180
  181 MFLSTLSIPY FLFQPWAHGY SKSSHPLIYS LVHGLLFLVF QLGVLGFVPT YVVLAYTLPP 240
  241 ASRFILILEQ IRLIMKAHSF VRENIPRVLN AAKEKSSKDP LPTVNQYLYF LFAPTLIYRD 300
  301 NYPRTPTVRW GYVAMQFLQV FGCLFYVYYI FERLCAPLFR NIKQEPFSAR VLVLCVFNSI 360
  361 LPGVLILFLS FFAFLHCWLN AFAEMLRFGD RMFYKDWWNS TSYSNYYRTW NVVVHDWLYY 420
  421 YVYKDLLWFF SKRFKSAAML AVFALSAVVH EYALAICLSY FYPVLFVLFM FFGMAFNFIV 480
  481 NDSRKRPIWN IMVWASLFLG YGLILCFYSQ EWYARQHCPL KNPTFLDYVR PRTWTCRYVF 540
  541