YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLN3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.85
Transmembrane Helix	38	59	0.71
Non-Cytoplasmic	60	94	0.72
Transmembrane Helix	95	116	0.64
Cytoplasmic	117	127	0.40
Transmembrane Helix	128	161	0.76
Non-Cytoplasmic	162	179	0.58
Transmembrane Helix	180	202	0.90
Cytoplasmic	203	211	0.77
Transmembrane Helix	212	231	0.96
Non-Cytoplasmic	232	279	0.87
Transmembrane Helix	280	299	0.88
Cytoplasmic	300	341	0.87
Transmembrane Helix	342	363	0.88
Non-Cytoplasmic	364	370	0.75
Transmembrane Helix	371	393	0.90
Cytoplasmic	394	411	0.85
Transmembrane Helix	412	431	0.82
Non-Cytoplasmic	432	438	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSAGSWRR LEDSEREETD SEPQAPRLDS RSVLWKNAVG FWILGLCNNF SYVVMLSAAH  60
   61 DILKQEQASG NQSHVEPGRT PTPHNSSSRF DCNSISTAAV LLADILPTLV IKLLAPLGLH 120
  121 LLPYSPRVLV SGVCSAGSFV LVAFSQSVGL SLCGVVLASI SSGLGEVTFL SLTAFYPSAV 180
  181 ISWWSSGTGG AGLLGSLSYL GLTQAGLSPQ HTLLSMLGIP VLLLASYFLL LTSPEPWDPG 240
  241 GENEAETAAR QPLIGTETPE SKPGASWDLS LQERWTVFKG LLWYIIPLVL VYFAEYFINQ 300
  301 GLFELLFFRN TSLSHAHEYR WYQMLYQAGV FASRSSLQCC RIRFTWVLAL LQCLNLALLL 360
  361 ADVCLNFLPS IYLIFIIILH EGLLGGAAYV NTFHNIALET SDKHREFAME AACISDTLGI 420
  421 SLSGVLALPL HDFLCHLP