YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FZD8_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.98
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	274	0.99
Transmembrane Helix	275	298	0.92
Cytoplasmic	299	309	0.91
Transmembrane Helix	310	330	0.92
Non-Cytoplasmic	331	347	0.79
Transmembrane Helix	348	365	0.63
Cytoplasmic	366	387	0.61
Transmembrane Helix	388	406	0.69
Non-Cytoplasmic	407	407	0.33
Transmembrane Helix	408	428	0.67
Cytoplasmic	429	437	0.53
Transmembrane Helix	438	457	0.59
Non-Cytoplasmic	458	483	0.90
Transmembrane Helix	484	506	0.91
Cytoplasmic	507	526	0.93
Transmembrane Helix	527	551	0.89
Non-Cytoplasmic	552	583	0.96
Transmembrane Helix	584	604	0.93
Cytoplasmic	605	618	0.85
Transmembrane Helix	619	638	0.60
Non-Cytoplasmic	639	685	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWGYLLEVT SLLAALAVLQ RSSGAAAASA KELACQEITV PLCKGIGYNY TYMPNQFNHD  60
   61 TQDEAGLEVH QFWPLVEIQC SPDLKFFLCS MYTPICLEDY KKPLPPCRSV CERAKAGCAP 120
  121 LMRQYGFAWP DRMRCDRLPE QGNPDTLCMD YNRTDLTTAA PSPPRRLPPP PPPGEQPPSG 180
  181 SGHSRPPGAR PPHRGGSSRG SGDAAAAPPS RGGKARPPGG GAAPCEPGCQ CRAPMVSVSS 240
  241 ERHPLYNRVK TGQIANCALP CHNPFFSQDE RAFTVFWIGL WSVLCFVSTF ATVSTFLIDM 300
  301 ERFKYPERPI IFLSACYLFV SVGYLVRLVA GHEKVACSGG APGAGGRGGA GGAAAAGAGA 360
  361 AGRGASSPGA RGEYEELGAV EQHVRYETTG PALCTVVFLL VYFFGMASSI WWVILSLTWF 420
  421 LAAGMKWGNE AIAGYSQYFH LAAWLVPSVK SIAVLALSSV DGDPVAGICY VGNQSLDNLR 480
  481 GFVLAPLVIY LFIGTMFLLA GFVSLFRIRS VIKQQGGPTK THKLEKLMIR LGLFTVLYTV 540
  541 PAAVVVACLF YEQHNRPRWE ATHNCPCLRD LQPDQARRPD YAVFMLKYFM CLVVGITSGV 600
  601 WVWSGKTLES WRALCTRCCW ASKGAAVGAG AGGSGPGGSG PGPGGGGGHG GGGGSLYSDV 660
  661 STGLTWRSGT ASSVSYPKQM PLSQV