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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CA2D1_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.67
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGCLLALT LTLFQSGLIG PSSEEPFPSP VTIKSWVDKM QEDLVTLAKT ASGVTQLADI  60
   61 YEKYQDLYTV EPNNARQLVE IAARDIEKLL SNRSKALVRL AMEAEKVQAA HQWREDFASN 120
  121 EVVYYNAKDD LDPERNESEP GSQRIKPVFI EDANFGRQIS YQHAAVHIPT DIYEGSTIVL 180
  181 NELNWTSALD EVFKRNRDED PTLLWQVFGS ATGLARYYPA SPWVDNSRTP NKIDLYDVRR 240
  241 RPWYIQGAAS PKDMLILVDV SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD 300
  301 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS RANCNKIIML 360
  361 FTDGGEERAQ EIFAKYNKDK KVRVFTFSVG QHNYDRGPIQ WMACENKGYY YEIPSIGAIR 420
  421 INTQEYLDVL GRPMVLAGDK AKQVQWTNVY LDALELGLVI TGTLPVFNVT GQSENKTNLK 480
  481 NQLILGVMGV DVSLEDIKRL TPRFTLCPNG YYFAIDPNGY VLLHPNLQPK PIGVGIPTIN 540
  541 LRKRRPNVQN PKSQEPVTLD FLDAELENEI KVEIRNKMID GESGEKTFRT LVKSQDERYI 600
  601 DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKLEETIT QARYSETLKP DNFEESGYTF 660
  661 IAPREYCNDL KPSDNNTEFL LNFNEFIDRK TPNNPSCNTD LINRILLDAG FTNELVQNYW 720
  721 SKQKNIKGVK ARFVVTDGGI TRVYPKEAGE NWQENPETYE DSFYKRSLDN DNYVFTAPYF 780
  781 NKSGPGAYES GIMVSKAVEL YIQGKLLKPA VVGIKIDVNS WIENFTKTSI RDPCAGPVCD 840
  841 CKRNSDVMDC VILDDGGFLL MANHDDYTNQ IGRFFGEIDP SMMRHLVNIS LYAFNKSYDY 900
  901 QSVCDPGAAP KQGAGHRSAY VPSIADILQI GWWATAAAWS ILQQLLLSLT FPRLLEAVEM 960
  961 EEDDFTASLS KQSCITEQTQ YFFKNDTKSF SGLLDCGNCS RIFHVEKLMN TNLVFIMVES1020
 1021 KGTCPCDTRL LMQAEQTSDG PDPCDMVKQP RYRKGPDVCF DNNVLEDYTD CGGVSGLNPS1080
 1081 LWSIFGLQFI LLWLVSGSRH YLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle