YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYNE4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVPPLGRE FPPEPVNCPL AAPRELDVVG GTICPAPEEE TSRPEQVQAS LGLPEHCMGE  60
   61 LKSTESATSP SRLPLASSHE HQDGGKPCEH SDSGLEVLEA EQDSLHLCLL RLNFRLQDLE 120
  121 RGLGSWTLAH NRIVQMQALQ AELRGAAERV DALLAFGEGL AERSEPRAWA SLEQVLRALG 180
  181 THRDTIFQRL WQLQAQLISY SLVLEKANLL DQDLEVEGDS DGPAAGGVWG PWAPSTFPTP 240
  241 AELEWDPAGD VGGLGPSGQK ISRIPGAPCE LCGYRGPQSS GQGLEDLLSL GLGHRKHLAA 300
  301 HHRRRLRKPQ DRKRQVSPSL PDAMLEVDRG VPAPASKRPL TLFFLLLFLL LVGATLLLPL 360
  361 SGVSCCSHAR LARTPYLVLS YVNGLPPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	341	0.75
Transmembrane Helix	342	363	0.91
Cytoplasmic	364	388	0.68