YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12841194
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNLVCGRW QLLRLLRPQR SYHSVAVSLR PLAAELLAAR RGNGRPPCAL LAVFTPRCIS  60
   61 TSATLFAEAQ VQAPPVIPAT SIPAAVPEVA SGGAADVVQC ATEPSFTELG LGSYTPVGLI 120
  121 QNLLEYIHVD LGLPWWGAIA TCTVLARCLV FPLIVKGQRE AAKIHNHMPE MQKFSARIRE 180
  181 AKLAGDQAEF YKATIEMTRY QKKHDIKLLR PLILPLTHAP VFISFFIALR EMANLPVPSL 240
  241 QTGGLWWFQD LTVSDPIYVL PLVVTATMWC VLELGAETGV QSNDLQFMRN IIRVMPLVVL 300
  301 PVTIHFPSAV FMYWLSSNVF SLCQVACLRI PAVRTVLKIP QRVVHDPDKL PPREGFLKSF 360
  361 KKGWKNAEIA QQLREREQRM QKHLDLAARG PLRQTFTHNP LLQHDPSHPP KAPNSNNSSI 420
  421 KANAKKPWQD TLG

Type	Start	End	Confidence
Cytoplasmic	1	47	0.70
Transmembrane Helix	48	67	0.47
Non-Cytoplasmic	68	132	0.80
Transmembrane Helix	133	155	0.80
Cytoplasmic	156	207	0.99
Transmembrane Helix	208	229	0.90
Non-Cytoplasmic	230	255	0.86
Transmembrane Helix	256	276	0.87
Cytoplasmic	277	291	0.88
Transmembrane Helix	292	315	0.87
Non-Cytoplasmic	316	433	0.79