YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EDNRB_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	101	0.99
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	134	0.81
Transmembrane Helix	135	157	0.84
Non-Cytoplasmic	158	177	0.90
Transmembrane Helix	178	197	0.91
Cytoplasmic	198	216	0.85
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	274	0.97
Transmembrane Helix	275	297	0.91
Cytoplasmic	298	320	0.93
Transmembrane Helix	321	342	0.88
Non-Cytoplasmic	343	368	0.89
Transmembrane Helix	369	389	0.73
Cytoplasmic	390	442	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSPASRCGR ALVALLLACG FLGVWGEKRG FPPAQATLSL LGTKEVMTPP TKTSWTRGSN  60
   61 SSLMRSSAPA EVTKGGRGAG VPPRSFPPPC QRNIEISKTF KYINTIVSCL VFVLGIIGNS 120
  121 TLLRIIYKNK CMRNGPNILI ASLALGDLLH IIIDIPINTY KLLAEDWPFG AEMCKLVPFI 180
  181 QKASVGITVL SLCALSIDRY RAVASWSRIK GIGVPKWTAV EIVLIWVVSV VLAVPEAIGF 240
  241 DMITSDYKGK PLRVCMLNPF QKTAFMQFYK TAKDWWLFSF YFCLPLAITA VFYTLMTCEM 300
  301 LRKKSGMQIA LNDHLKQRRE VAKTVFCLVL VFALCWLPLH LSRILKLTLY DQSNPHRCEL 360
  361 LSFLLVLDYI GINMASLNSC INPIALYLVS KRFKNCFKSC LCCWCQTFEE KQSLEEKQSC 420
  421 LKFKANDHGY DNFRSSNKYS SS