YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A4_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.89
Transmembrane Helix	65	87	0.86
Non-Cytoplasmic	88	105	0.75
Transmembrane Helix	106	125	0.92
Cytoplasmic	126	133	0.77
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	162	0.76
Transmembrane Helix	163	185	0.84
Cytoplasmic	186	198	0.67
Transmembrane Helix	199	218	0.80
Non-Cytoplasmic	219	228	0.79
Transmembrane Helix	229	250	0.94
Cytoplasmic	251	342	0.94
Transmembrane Helix	343	365	0.89
Non-Cytoplasmic	366	376	0.83
Transmembrane Helix	377	398	0.88
Cytoplasmic	399	407	0.85
Transmembrane Helix	408	430	0.89
Non-Cytoplasmic	431	437	0.78
Transmembrane Helix	438	460	0.86
Cytoplasmic	461	477	0.81
Transmembrane Helix	478	498	0.92
Non-Cytoplasmic	499	518	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKGAERRK QATPGQTPEG NVVMSFSFES YQLEEEDCQG KDISDKGVLA LSEPAFEEAV  60
   61 PDDRYHGIYF AMLLAGVGFL LPYNSFITDV DYLHHKFEGT SIVFDMGLTY ILVALVAVIL 120
  121 NNVLVEMLSL HTRITVGYLF ALGPLLFVTI FDVWLERFTI KQAYVINLMS MGTVAFGCTV 180
  181 QQSSFYGYMG MLPKRYTQGV MTGESTAGVI ISLSRIFTKL LIKDERKNTI IFFVISICMV 240
  241 LVCFILHLLV RRTRFVQYYT SLARRGLSHA KDHSQHASQY QVHHDVITEE GNGAVGCSPA 300
  301 GDGCADFAGG NTYVRFDVPK PKMKRSWPGV KDMILHRYVV ARVIWTYMLS IAVTYFITLC 360
  361 LFPGLESEIK NATLGEWLPI LIMAIFNISD FVGKILAAVP YEWNGTRLLF FSCVRVVFIP 420
  421 LFIMCVYPAQ MPMFSHPAWP CIFSLFMGIT NGYFGSVPMI HAAGKVAPEQ RELAGNIMTV 480
  481 SYMSGLMLGS VVAYAAYSFT ASGSSFHSQT GYNFTQGY