YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HLXB9_MOUSE, MNX...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSKNFRID ALLAVDPPRA ASTQSAPLAL VTSLATTVSG PGRGGSGGGG TSSGASRSCS  60
   61 PASSEATAAP GDRLRAESPS PPRLLAAHCA LLPKPGFLGA GGGGGAAGGP GTPHHHAHPG 120
  121 AAAAAAAAAA AAAAGGLALG LHPGGAQGGA GLPAQAALYG HPVYSYSAAA AAAALAGQHP 180
  181 ALSYSYPQVQ GAHPAHPADP IKLGASTFQL DQWLRASTAG MILPKMPDFS CQAQSNLLGK 240
  241 CRRPRTAFTS QQLLELEHQF KLNKYLSRPK RFEVATSLML TETQVKIWFQ NRRMKWKRSK 300
  301 KAKEQAAQEA EKQKGGGGGT GKGGSEEKTE EELMGPPVSG DKASGRRLRD LRDSDPDEDE 360
  361 DDEEEDNFPY SNGAGAHAAS SDCSSEDDSP PPRLGGPGHQ PLPQ

Type	Start	End	Confidence
Cytoplasmic	1	89	0.84
Transmembrane Helix	90	108	0.75
Non-Cytoplasmic	109	120	0.69
Transmembrane Helix	121	142	0.90
Cytoplasmic	143	161	0.71
Transmembrane Helix	162	181	0.71
Non-Cytoplasmic	182	404	0.75