YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EKI1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAARPCVRAA AALRRGRPGT EGSSSLPAPA ALVVAVAVVV VVVSAVAWAM ANYIHVPPGS  60
   61 PEVPKLDVTV QDQEEQRCRD GALSLLRHLR PHWDPREVTL QLFTDGITNK LIACYVGDTM 120
  121 EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC TFNNGLCYEF IQGELLDPQH 180
  181 VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS NLWLKMGKYF SLIPTGFADE NINKRFLSEI 240
  241 PSPQLLQEEM TWMKELLSSL GSPVVLCHND LLCKNIIYNE KQGDVQFIDY EYSGYNYLAY 300
  301 DIGNHFNEFA GVSDVDYSLY PDRELQGQCV RSYLEAYKEY KGFGSDVTEK EVETLFIQVN 360
  361 QFALASHFFW GLWALIQAKY STIEFDFLGY AVVRFNQYFK MKPEVTALKM PE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.79
Transmembrane Helix	30	51	0.92
Non-Cytoplasmic	52	412	0.87