YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOX1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSMMMETDL HSPGGAQAPT NLSGPAGARG GGGGGGGGGG GGGTKANQDR VKRPMNAFMV  60
   61 WSRGQRRKMA QENPKMHNSE ISKRLGAEWK VMSEAEKRPF IDEAKRLRAL HMKEHPDYKY 120
  121 RPRRKTKTLL KKDKYSLAGG LLAAGAGGGG AAVAMGVGVG VGAAAVGQRL ESPGGAAGGG 180
  181 YAHVNGWANG AYPGSVAAAA AAAAMMQEAQ LAYGQHPGAG GRHPHAHPAH PHPHHPHAHP 240
  241 HNPQPMHRYD MGALQYSPIS NSQGYMSASP SGYGGIPYGA AAAAAAAAGG AHQNSAVAAA 300
  301 AAAAAASSGA LGALGSLVKS EPSGSPPAPA HSRAPCPGDL REMISMYLPA GEGGDPAAAA 360
  361 AAAAQSRLHS LPQHYQGAGA GVNGTVPLTH I

Type	Start	End	Confidence
Cytoplasmic	1	136	0.96
Transmembrane Helix	137	165	0.82
Non-Cytoplasmic	166	186	0.87
Transmembrane Helix	187	206	0.83
Cytoplasmic	207	270	0.90
Transmembrane Helix	271	291	0.81
Non-Cytoplasmic	292	295	0.78
Transmembrane Helix	296	318	0.87
Cytoplasmic	319	391	0.90