YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT1A_MOUSE, 5H1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMFSLGQGN NTTTSLEPFG TGGNDTGLSN VTFSYQVITS LLLGTLIFCA VLGNACVVAA  60
   61 IALERSLQNV ANYLIGSLAV TDLMVSVLVL PMAALYQVLN KWTLGQVTCD LFIALDVLCC 120
  121 TSSILHLCAI ALDRYWAITD PIDYVNKRTP RRAAALISLT WLIGFLISIP PMLGWRAPED 180
  181 RSNPNECTIS KDHGYTIYST FGAFYIPLLL MLVLYGRIFR AARFRIRKTV KKVEKKGAGT 240
  241 SFGTSSAPPP KKSLNGQPGS GDCRRSAENR AVGTPCANGA VRQGEDDATL EVIEVHRVGN 300
  301 SKGDLPLPSE SGATSYVPAC LERKNERTAE AKRKMALARE RKTVKTLGII MGTFILCWLP 360
  361 FFIVALVLPF CESSCHMPEL LGAIINWLGY SNSLLNPVIY AYFNKDFQNA FKKIIKCKFC 420
  421 R

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.93
Transmembrane Helix	38	63	0.86
Cytoplasmic	64	72	0.82
Transmembrane Helix	73	95	0.91
Non-Cytoplasmic	96	111	0.85
Transmembrane Helix	112	132	0.92
Cytoplasmic	133	152	0.90
Transmembrane Helix	153	174	0.91
Non-Cytoplasmic	175	196	0.94
Transmembrane Helix	197	219	0.87
Cytoplasmic	220	342	0.99
Transmembrane Helix	343	368	0.85
Non-Cytoplasmic	369	382	0.86
Transmembrane Helix	383	403	0.75
Cytoplasmic	404	421	0.78