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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18087775, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.46
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPMQRREDC KGLVFLGVLL GMLWKAGSTQ IRYSVPEELE KGSRVGNISK DLGLEPRELE  60
   61 KRGVRIVSRG RAQLFALNPR SGSLVTAGRI DREELCMGSI KCQLNLEILM EDIGKIYGVE 120
  121 IEVRDINDNA PYFRESELEI KMSENAAAGM RFPLPHAWDP DIGKNSLQSY QLSPNAHFSL 180
  181 EVQNGADGNK YPELVLESSL DREEKAAHLL VLTASDAGDP VRTGTARIRV MVVDANDNAP 240
  241 AFARSEYRVS VRENVAVGTQ LLLVNATDPD EGANAEVIYS FRYVDDKAAK VFKLDSNLGT 300
  301 ISTIGELNHE ESGFYEMEVQ ATDNAGYSAR AKVLVTVLDV NDNAPEVAIT SLTNSVPENS 360
  361 PQGTLIALLN VNDQDSGENG QVICSIQENL PFKLEKSYGN YYRLVTDAVL DREEVPSYNI 420
  421 TMTATDRGSP PLTTETHLAL DIADTNDNSP VFLQASYWAY IPENNPRGAS IASVTAHDPD 480
  481 SDKNAQVTYS LAEDTHQGVP LSSYVSINSD TGVLYALHSF DYEQFPDLQL QVIARDSGDP 540
  541 PLSSNVSLSL FVLDQNDNVP EILYPTLPTD GSTGVELAPR SAEPGYLVTK VVAVDRDSGQ 600
  601 NAWLSYRLLK ASEPGLFSVG LHTGEISTAR ALMDRDALKQ NLVVSVQDHG QPPLSATVTL 660
  661 TVAIADSIPD VLADLDNLES PSTSETSGLT LYLVVAVAAV STVFLVFVLV LLALRLRRWH 720
  721 SLRLLRAGGP GLADVAASHF VGVDGVQAFL QTYSHEVSLT AGSRKSHLIF PQPNYADTLI 780
  781 SQESCEKTEP LLPSGDSVFS KDNHALNQQA PPNTDWRFSQ AQRPGTSGSQ NGDETGTWPN 840
  841 NQFDTEMLQA MILASASEAA DGSSTLGGGA GTMGLSARYG PQFTLQHVPD YRQNVYIPGS 900
  901 NATLTNAAGK RDGKAPAGGN GNKKKSGKKE KK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle