YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VACHT_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	57	0.87
Non-Cytoplasmic	58	89	0.88
Transmembrane Helix	90	107	0.61
Cytoplasmic	108	150	0.58
Transmembrane Helix	151	172	0.89
Non-Cytoplasmic	173	178	0.54
Transmembrane Helix	179	201	0.56
Cytoplasmic	202	212	0.91
Transmembrane Helix	213	235	0.91
Non-Cytoplasmic	236	244	0.78
Transmembrane Helix	245	266	0.92
Cytoplasmic	267	286	0.90
Transmembrane Helix	287	308	0.92
Non-Cytoplasmic	309	326	0.91
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	356	0.73
Transmembrane Helix	357	377	0.94
Non-Cytoplasmic	378	382	0.74
Transmembrane Helix	383	407	0.86
Cytoplasmic	408	416	0.77
Transmembrane Helix	417	443	0.76
Non-Cytoplasmic	444	450	0.81
Transmembrane Helix	451	472	0.88
Cytoplasmic	473	530	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPTAPTGQA RAAATKLSEA VGAALQEPQR QRRLVLVIVC VALLLDNMLY MVIVPIVPDY  60
   61 IAHMRGGSES PTLISEVWEP TLPPPTLANA SAYLANTSAS PTAAGSARSI LRPRYPTESE 120
  121 DVKIGVLFAS KAILQLLVNP LSGPFIDRMS YDVPLLIGLG VMFASTVMFA FAEDYATFFA 180
  181 ARSLQGLGSA FADTSGIAMI ADKYPEEPER SRALGVALAF ISFGSLVAPP FGGILYEFAG 240
  241 KRVPFLVLAA VSLFDALLLL AVAKPFSAAA RARANLPVGT PIHRLMLDPY IAVVAGALTT 300
  301 CNIPLAFLEP TIATWMKHTM AASEWEMGMV WLPAFVPHVL GVYLTVRLAA RYPHLQWLYG 360
  361 ALGLAVIGVS SCVVPACRSF APLVVSLCGL CFGIALVDTA LLPTLAFLVD VRHVSVYGSV 420
  421 YAIADISYSV AYALGPIVAG HIVHSLGFEQ LSLGMGLANL LYAPVLLLLR NVGLLTRSRS 480
  481 ERDVLLDEPP QGLYDAVRLR EVQGKDGGEP CSPPGPFDGC EDDYNYYSRS