YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18204496
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRVRQRLLLP SLRALTGSRN VGLLVPRVAS RTQCGSSCGS QRPLRPGQYS TITEVALQSG  60
   61 KGTVSLPSRA AERAVGRWLL VCSGTVAGAV ILGGVTRLTE SGLSMVDWHL IKEMKPPTSQ 120
  121 EEWEAEFQKY QQFPEFKILN HDMTLAEFKF IWYMEYSHRM WGRAVGLAYI LPAAYFWRKG 180
  181 WLNRGMKGRV LALCGLVCFQ GLLGWYMVKS GLEEKPESYD IPRVSQYRLA AHLGSALVLY 240
  241 CASLWTSLSL LLPQHKLPET RQLLWLRRFA GGTAGLVFLT ALSGAFVAGL DAGLVYNSFP 300
  301 KMGESWIPED LLTFSPVLKN VFENPTMVQF DHRLLGVTSV TAITVLYFLS RRIPLPRRTK 360
  361 MAAVTLLALA YAQVALGIST LLMYVPTPLA ATHQSGSLAL LSGALWLMNE LRRVPK

Type	Start	End	Confidence
Cytoplasmic	1	74	0.99
Transmembrane Helix	75	98	0.89
Non-Cytoplasmic	99	159	0.98
Transmembrane Helix	160	178	0.95
Cytoplasmic	179	187	0.85
Transmembrane Helix	188	208	0.92
Non-Cytoplasmic	209	228	0.96
Transmembrane Helix	229	252	0.90
Cytoplasmic	253	268	0.88
Transmembrane Helix	269	290	0.91
Non-Cytoplasmic	291	331	0.94
Transmembrane Helix	332	350	0.95
Cytoplasmic	351	361	0.86
Transmembrane Helix	362	383	0.93
Non-Cytoplasmic	384	389	0.81
Transmembrane Helix	390	409	0.93
Cytoplasmic	410	416	0.92