YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PVR1_MOUSE, PVRL...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARMGLAGAA GRWWGLALGL TAFFLPGTHT QVVQVNDSMY GFIGTDVVLH CSFANPLPSV  60
   61 KITQVTWQKA SNGSKQNMAI YNPTMGVSVL PPYEKRVEFL RPSFIDGTIR LSGLELEDEG 120
  121 MYICEFATFP TGNRESQLNL TVMAKPTNWI EGTRAVLRAR KGQDNKVLVA TCTSANGKPP 180
  181 SAVSWETRLK GEAEYQEIRN PNGTVTVISR YRLVPSREAH RQSLACIVNY HLDRFRESLT 240
  241 LNVQYEPEVT IEGFDGNWYL QRTDVKLTCK ADANPPATEY HWTTLNGSLP KGVEAQNRTL 300
  301 FFRGPITYSL AGTYICEATN PIGTRSGQVE VNITEFPYTP TPEHGRRAGQ MPTAIIGGVA 360
  361 GSVLLVLIVV GGIIVALRRR RHTFKGDYST KKHVYGNGYS KAGIPQHHPP MAQNLQYPDD 420
  421 SDDEKKASPL GGSSYEEEEE EEGGGGGERK VGGPHPKYDE DAKRPYFTVD EAEARQDGYG 480
  481 DRTLGYQYDP EQLDLAENMV SQNDGSFISK KEWYV

Type	Start	End	Confidence
Signal Peptide	1	30	0.92
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	353	0.98
Transmembrane Helix	354	376	0.95
Cytoplasmic	377	515	0.98