YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FFAR2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPDWHSSLI LTAYILIFLT GLPANLLALR AFMGRVRQPQ PAPVHILLLN LTLADLLLLL  60
   61 LLPFRIVEAA SNFRWYLPKI VCALTGFGFY SSIYCSTWLL AGISMERYLG VAFPVQYKLS 120
  121 RRPLYGVIAA LVAWIMSFGH CTIVIIVQYL NSTEQVGTEN QITCYENFTQ EQLDVVLPVR 180
  181 LELCLVLFFV PMAVTIFCYW RFVWIMLTQP HVGAQRRRRA VGLAVVTLLN FLVCFGPYNM 240
  241 SHLVGFYLRQ SPSWRVEAVV FSSLNASLDP LLFYFSSSVV RRAFGKGLLL IRNPASSMLG 300
  301 RGAKETVEGT KMDRGGSQAE GVQSSEFVTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.85
Transmembrane Helix	10	29	0.94
Cytoplasmic	30	43	0.80
Transmembrane Helix	44	66	0.89
Non-Cytoplasmic	67	79	0.84
Transmembrane Helix	80	103	0.85
Cytoplasmic	104	123	0.90
Transmembrane Helix	124	147	0.92
Non-Cytoplasmic	148	182	0.93
Transmembrane Helix	183	203	0.92
Cytoplasmic	204	219	0.92
Transmembrane Helix	220	241	0.91
Non-Cytoplasmic	242	257	0.86
Transmembrane Helix	258	280	0.62
Cytoplasmic	281	330	0.76