YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A4_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.71
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	95	0.76
Transmembrane Helix	96	119	0.83
Cytoplasmic	120	128	0.41
Transmembrane Helix	129	146	0.64
Non-Cytoplasmic	147	157	0.70
Transmembrane Helix	158	181	0.92
Cytoplasmic	182	192	0.71
Transmembrane Helix	193	215	0.84
Non-Cytoplasmic	216	226	0.76
Transmembrane Helix	227	249	0.84
Cytoplasmic	250	266	0.78
Transmembrane Helix	267	291	0.88
Non-Cytoplasmic	292	310	0.77
Transmembrane Helix	311	333	0.83
Cytoplasmic	334	352	0.79
Transmembrane Helix	353	375	0.83
Non-Cytoplasmic	376	382	0.67
Transmembrane Helix	383	407	0.86
Cytoplasmic	408	421	0.74
Transmembrane Helix	422	445	0.87
Non-Cytoplasmic	446	451	0.67
Transmembrane Helix	452	475	0.78
Cytoplasmic	476	797	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAMFMAFR LWNWLLLLAV LTRSEATSYV NESSNPTAQQ APDARFAASS SDPDEGISVF  60
   61 ELDYDYVQIP YEVTLWILLA SLAKIGFHLY HRLPHLMPES CLLIIVGALV GGIIFGTHHK 120
  121 SPPVMDSSIY FLYLLPPIVL ESGYFMPTRP FFENIGSILW WAGLGALINA FGIGLSLYFI 180
  181 CQIKAFGLGD INLLHNLLFG SLISAVDPVA VLAVFEEARV NEQLYMMIFG EALLNDGISV 240
  241 VLYNILIAFT KMHKFEDIEA VDILAGCARF VIVGCGGVFF GIIFGFISAF ITRFTQNISA 300
  301 IEPLIVFMFS YLSYLAAETL YLSGILAITA CAVTMKKYVE ENVSQTSYTT IKYFMKMLSS 360
  361 VSETLIFIFM GVSTIGKNHE WNWAFICFTL LFCQIWRAIS VFTLFYVSNQ FRTFPFSIKD 420
  421 QFIIFYSGVR GAGSFSLAFL LPLSLFPRKK LFVTATLVVT YFTVFFQGIT IGPLVRYLDV 480
  481 RKTNKKESIN EELHSRLMDH LKAGIEDVCG QWSHYQVRDK FKKFDHRYLR KILIRRNLPK 540
  541 SSIVSLYKKL EMKQAIEMVE TGILSSVASP TPYQSERIQG IKRLSPEDVE SMRDILTRSM 600
  601 YQVRQRTLSY NKYNLKPQTS EKQAKEILIR RQNTLRESMR KGQSLPWGKP AGTKNFRYLS 660
  661 FPYSNPQAAR REARAAEPTD DDGTDSGFQP LMFSIHSRAG SLQERRQTQA VIPMKRLQRG 720
  721 EKALSFSYRS NTSWEDQAGW RRMDVLRPKP LFYAVAEEYD SGEQTEEETS AILSRWTAEH 780
  781 RHSTEHHKSH SPLLHRK