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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18257341, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.36
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSAVPCSL GPSTRASSTH RDATGTKQTR ALKRGDASKR QAELEAAIQR KVEFERKAVR  60
   61 IVEQLLEENI TEEFLKECGM FITPAHYSDV VDERSIIKLC GYPLCQKKLG VIPKQKYRIS 120
  121 TKTNKVYDIT ERKSFCSNFC YRASKFFETQ IPKTPVWVRE EERPPDFQLL KKGQSGSSGE 180
  181 VVQFFRDAVT AADVDGSGAL DAQCDPASSS SWSERASDEE EQGFVSSLLP GNRPKAVDTR 240
  241 PQPHTKSSIM RKKAAQNVDS KEGEQTVSEV TEQLDNCRLD SQEKVATCKR PLKKESTQIS 300
  301 SPGPLCDRFN TSAISEHTHG VSQVTLVGIS KKSAEHFRSK FAKSNPGSGS ASGLVHVRPE 360
  361 VAKANLLRVL SDTLTEWKTE ETLKFLYGQN HDSVCLKPSS ASEPDEELDE DDISCDPGSC 420
  421 GPALSQAQNT LDATLPFRGS DTAIKPLPSY ESLKKETEML NLRVREFYRG RCVLNEDTTK 480
  481 SQDSKESVLQ RDPSFPLIDS SSQNQIRRRI VLEKLSKVLP GLLGPLQITM GDIYTELKNL 540
  541 IQTFRLSNRN IIHKPVEWTL IAVVLLLLLT PILGIQKHSP KNVVFTQFIA TLLTELHLKF 600
  601 EDLEKLTMIF RTSC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle