YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118764161
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	128	0.98
Transmembrane Helix	129	150	0.90
Non-Cytoplasmic	151	216	0.96
Transmembrane Helix	217	238	0.89
Cytoplasmic	239	259	0.85
Transmembrane Helix	260	281	0.86
Non-Cytoplasmic	282	288	0.74
Transmembrane Helix	289	305	0.59
Cytoplasmic	306	316	0.52
Transmembrane Helix	317	340	0.80
Non-Cytoplasmic	341	390	0.64
Transmembrane Helix	391	411	0.91
Cytoplasmic	412	426	0.82
Transmembrane Helix	427	447	0.88
Non-Cytoplasmic	448	504	0.92
Transmembrane Helix	505	526	0.85
Cytoplasmic	527	531	0.77
Transmembrane Helix	532	555	0.82
Non-Cytoplasmic	556	578	0.80
Transmembrane Helix	579	604	0.65
Cytoplasmic	605	752	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEQLFNRG YGRNSYNSIT SASSDEELLD GAGVIMDFHT TEDDNLLDGD ASPGSNYAMS  60
   61 NGGGGGGGAS SSTHLLDLLE EPIPGVGTYD DFHTIDWVRE KCKDRERHRK INSKKKESAW 120
  121 EFTKSLYDAW SGWLVVTLTG LASGALAGGI DIAADWMNDL KEGVCLSAMW FNHEQCCWGS 180
  181 NKTTFAERDK CPQWKTWAEL ILGQEQGPGS YIMNYFMFTF WALSFAFLAV SLVKVFAPYA 240
  241 CGSGIPEIKT ILSGFIIRGY LGKWTLMIKT ITLVLAVASG LSLGKEGPLV HVACCCGNIF 300
  301 SYLFPKYSKN EAKKREVLSA ASAAGVSVAF GAPIGGVLFS LEEVSYYFPL KTLWRSFFAA 360
  361 LVAAFVLRSI NPFGNSRLVL FYVEYHTPWY LFELFPFILL GVFGGLWGAF FIRANIAWCR 420
  421 RRKSTRFGKY PVLEVITVAA ITAIVAFPNP YTRQNTSELI KELFTDCGPL ESSQLCQYRS 480
  481 LMNGSQADPT GPDTASAATP GVYSAMWQLS LALVFKIIMT IFTFGLKVPS GLFIPSMAIG 540
  541 AIAGRIVGIA VEQLAYYHHD WFVFREWCEV GADCITPGLY AMVGAAACLG GVTRMTVSLV 600
  601 VIVFELTGGL EYIVPLMAAV MTSKWVGDAF GREGIYEAHI RLNGYPFLDA KEEFTHTTLA 660
  661 REVMRPRRSD PPLAVLTQDD MTLAELQGII SETSYNGFPV IVSKESQRLV GFALRRDITI 720
  721 AIENARRKQE GIVLNSRVYF TQHAPTLPAD SP