YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118763849, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	31	0.94
Non-Cytoplasmic	32	65	0.95
Transmembrane Helix	66	87	0.94
Cytoplasmic	88	98	0.85
Transmembrane Helix	99	119	0.93
Non-Cytoplasmic	120	124	0.84
Transmembrane Helix	125	147	0.89
Cytoplasmic	148	156	0.83
Transmembrane Helix	157	179	0.87
Non-Cytoplasmic	180	187	0.92
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	273	0.98
Transmembrane Helix	274	296	0.90
Non-Cytoplasmic	297	313	0.89
Transmembrane Helix	314	334	0.95
Cytoplasmic	335	340	0.93
Transmembrane Helix	341	363	0.90
Non-Cytoplasmic	364	371	0.79
Transmembrane Helix	372	396	0.81
Cytoplasmic	397	408	0.84
Transmembrane Helix	409	431	0.92
Non-Cytoplasmic	432	436	0.84
Transmembrane Helix	437	458	0.93
Cytoplasmic	459	504	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGALRQLTK SPVLVAAILI AGIGGTFQYG FNISVLNSPS PFIKELVNST CQQRYGHSLE  60
   61 PWELSLIWSF IVSIYSIGGL AGTLYAGRVA GMYGRKTTLL LNNVLAISGA ILMLFSKTAL 120
  121 SFEMIMVARV LYGINAGVSL TVHTMYILEC APKRLRGMVG VSVASFVSLG KFSGQLLGIS 180
  181 EVLGTEQGWI WLLAFSGAAG LLQLLTLPFL PESPRYLLLE KADKHGCETA LRRLWGTERD 240
  241 PGPEMEEMLA EHAALKGVKI HRLMDLFLDH NVRWQLFTII VTFITLQLCG INAVYLYSFD 300
  301 VFQAAGIAKE NLRYAALGTG LCEVSTSIAC VLIIESTGKR LLLFRGYICM AASLALLTLT 360
  361 LYLQDFVSWM PYCSMVLVFI YIFFFSSGPA GVTAPLPGEI FTQSYKPPAF VVACVLNWIG 420
  421 LFLVGMLFPL IVEHLDYFCF LVFFVFCFFS GVFVWFHVPE TKNKTVLEIT EDFKKMHQKR 480
  481 RHSLQSKMSS ILINDIQSTK CTKL