YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSMA_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNFSLRLR VFNLNCWDIP YLSKHRADRM KRLGDFLNLE NFDLALLEEV WSEQDFQYLR  60
   61 QRLSLTYPDA HYFRSGMIGS GLCVFSKHPI QEIFQHVYSL NGYPYMFHHG DWFCGKSVGL 120
  121 LVLRLSGLVL NAYVTHLHAE YSRQKDIYFA HRVAQAWELA QFIHHTSKNA DVVLLCGDLN 180
  181 MHPKDLGCCL LKEWTGLHDA FVETEDFKGS DDGCTMVPKN CYVSQQDLGP FPSGIRIDYV 240
  241 LYKAVSEFHV CCETLKTTTG CDPHSDKPFS DHEALMATLY VKHSPPQEDP CTACGPLERS 300
  301 DLISVLREAR TELGLGIAKA RWWAAFSGYV IVWGLSLLVL LCVLAAGEEA REVAIILCIP 360
  361 SVGLVLVAGA VYLFHKQEAK GLCRAQAEML HVLTRETETQ DRGSEPHLAY CLQQEGDRA

Type	Start	End	Confidence
Cytoplasmic	1	69	0.94
Transmembrane Helix	70	90	0.50
Non-Cytoplasmic	91	111	0.54
Transmembrane Helix	112	134	0.49
Cytoplasmic	135	324	0.96
Transmembrane Helix	325	347	0.92
Non-Cytoplasmic	348	352	0.92
Transmembrane Helix	353	374	0.97
Cytoplasmic	375	419	0.96