YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IGDC3_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPRTASPR RLPALRRPGF LPPLLPPPPP PLLLLLLLLP LPAPSLGLGH SAELAFSVEP  60
   61 NDDIANPGQP IVLGCKVEGT PPVQVSWRKN GAELPEGTHT TLLANGSLLI HHFRLEQGGS 120
  121 PSDEGDYECV AQNRFGLLVS RKARLQAATM SDFHVHPQAV TGEEGGVARF QCQIHGLPKP 180
  181 LITWEKNRVP IDTDDERYTL LPKGVLQITG LRAEDSGIFH CVASNIASVR VSHGARLTVS 240
  241 GSGSGTYKEP TILVGPENLT LTVHQTAVLE CVATGNPRPI VSWSRLDGRP IGVEGIQVLG 300
  301 TGNLIISDVT VQHSGVYVCA ANRPGTRVRR TAQGRLVVQA PAEFVQHPQS ISRPAGTTAM 360
  361 FTCQAQGEPP PHVTWLKNGQ VLGAGGHVRL KNNNSTLSIS GVGPEDEAIY QCVAENIAGS 420
  421 SQASARLTVL WAEGLPGPPR NVRAVSVSST EVRVSWSEPL AHTKEIIGYV LHIRKAADSP 480
  481 KLEYQEAVSK STFQHLVRDL EPSTAYSFYI KAYTPRGASL ASVPTLASTL GEAPVPPPLS 540
  541 VRLLGSSSLQ LLWKPWPRLA QHNGGFKLFY RPVSATSFTG PILLPGTVSS YNLSQLDPST 600
  601 VYEVKLLAYN QHGDGNATVR FVSLKGASER TALTPPCDCR KEDVTNHTST TGIVIGIHIG 660
  661 VTCIIFCVLF LLFGQRGRVL LCKDVENQLS PPQGPRSQRD PGILALNGLS RGEGGQLSRD 720
  721 EKPVDAKELE QLFPTAGSAA QPGSTPTDPA APAPCEETQL SMVQLQGFNL VAGRTTEATS 780
  781 PCAGPGPVPA PQDIGPVPLS EGQTQPPAVA APQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle