YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRX2_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYPQGYLYQ APGSLALYSC PAYGASALAA PRSEELARSA SGSAFSPYPG SAAFTAQAAT  60
   61 GFGSPLQYSA DAAAAAAAGF PSYVGSPYDT HTTGMTGAIS YHPYGSAAYP YQLNDPAYRK 120
  121 NATRDATATL KAWLNEHRKN PYPTKGEKIM LAIITKMTLT QVSTWFANAR RRLKKENKMT 180
  181 WAPRNKSEDE DEDEGDASRS KEESSDKAQD GTETSAEDEG ISLHVDSLTD HSCSAESDGE 240
  241 KLPCRAGDAL CESGSECKDK FEDLEDEEDE EDECERDLAP PKPVTSSPLT GVEAPLLSPA 300
  301 PEAAPRGGSG GKTPLGSRTS PGAPPPASKP KLWSLAEIAT SDLKQPSLGP GCGPPGLPAA 360
  361 AAPASTGAPP GGSPYSASPL LGRHLYYTSP FYGNYTNYGN LNAALQGQGL LRYNTAASSP 420
  421 GETLHAMPKA ASDTGKAGSH SLESHYRPPG GGYEPKKDTS EGCAVVGAGV QTYL

Type	Start	End	Confidence
Signal Peptide	1	29	0.52
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	474	0.98