YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSN1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	132	0.92
Transmembrane Helix	133	154	0.93
Cytoplasmic	155	160	0.93
Transmembrane Helix	161	183	0.91
Non-Cytoplasmic	184	190	0.91
Transmembrane Helix	191	214	0.87
Cytoplasmic	215	222	0.78
Transmembrane Helix	223	241	0.91
Non-Cytoplasmic	242	245	0.79
Transmembrane Helix	246	268	0.81
Cytoplasmic	269	380	0.83
Transmembrane Helix	381	399	0.58
Non-Cytoplasmic	400	405	0.64
Transmembrane Helix	406	427	0.92
Cytoplasmic	428	433	0.63
Transmembrane Helix	434	453	0.88
Non-Cytoplasmic	454	467	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIPAPLSY FQNAQMSEDS HSSSAIRSQN DSQERQQQHD RQRLDNPEPI SNGRPQSNSR  60
   61 QVVEQDEEED EELTLKYGAK HVIMLFVPVT LCMVVVVATI KSVSFYTRKD GQLIYTPFTE 120
  121 DTETVGQRAL HSILNAAIMI SVIVIMTILL VVLYKYRCYK VIHAWLIISS LLLLFFFSFI 180
  181 YLGEVFKTYN VAVDYVTVAL LIWNFGVVGM IAIHWKGPLR LQQAYLIMIS ALMALVFIKY 240
  241 LPEWTAWLIL AVISVYDLVA VLCPKGPLRM LVETAQERNE TLFPALIYSS TMVWLVNMAE 300
  301 GDPEAQRRVP KNPKYNTQRA ERETQDSGSG NDDGGFSEEW EAQRDSHLGP HRSTPESRAA 360
  361 VQELSGSILT SEDPEERGVK LGLGDFIFYS VLVGKASATA SGDWNTTIAC FVAILIGLCL 420
  421 TLLLLAIFKK ALPALPISIT FGLVFYFATD YLVQPFMDQL AFHQFYI