YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCKAR_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVDSLLMN GSNITPPCEL GLENETLFCL DQPQPSKEWQ SAVQILLYSF IFLLSVLGNT  60
   61 LVITVLIRNK RMRTVTNIFL LSLAVSDLML CLFCMPFNLI PNLLKDFIFG SAVCKTTTYF 120
  121 MGTSVSVSTF NLVAISLERY GAICRPLQSR VWQTKSHALK VIAATWCLSF TIMTPYPIYS 180
  181 NLVPFTKNNN QTANMCRFLL PSDAMQQSWQ TFLLLILFLI PGVVMVVAYG LISLELYQGI 240
  241 KFDASQKKSA KEKRLSSGGG GGGGSSSSRY EDSDGCYLQK SRPPRKLELQ QLSTSSSGGR 300
  301 INRIRSSGSA ANLIAKKRVI RMLIVIVVLF FLCWMPIFSA NAWRAYDTVS AEKHLSGTPI 360
  361 SFILLLSYTS SCVNPIIYCF MNKRFRLGFM ATFPCCPNPG PTGVRGEVGE EEDGRTIRAS 420
  421 LSRYSYSHMS TSAPPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.97
Transmembrane Helix	45	67	0.92
Cytoplasmic	68	77	0.84
Transmembrane Helix	78	100	0.92
Non-Cytoplasmic	101	116	0.91
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	156	0.90
Transmembrane Helix	157	178	0.91
Non-Cytoplasmic	179	210	0.95
Transmembrane Helix	211	232	0.94
Cytoplasmic	233	318	0.98
Transmembrane Helix	319	340	0.90
Non-Cytoplasmic	341	359	0.86
Transmembrane Helix	360	381	0.93
Cytoplasmic	382	436	0.99