YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28279957, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.94
Transmembrane Helix	58	77	0.87
Non-Cytoplasmic	78	84	0.86
Transmembrane Helix	85	104	0.94
Cytoplasmic	105	113	0.74
Transmembrane Helix	114	136	0.87
Non-Cytoplasmic	137	142	0.74
Transmembrane Helix	143	165	0.89
Cytoplasmic	166	183	0.90
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	216	0.90
Transmembrane Helix	217	238	0.92
Cytoplasmic	239	297	0.97
Transmembrane Helix	298	316	0.91
Non-Cytoplasmic	317	345	0.91
Transmembrane Helix	346	367	0.90
Cytoplasmic	368	379	0.81
Transmembrane Helix	380	399	0.86
Non-Cytoplasmic	400	614	0.87
Transmembrane Helix	615	634	0.76
Cytoplasmic	635	646	0.71
Transmembrane Helix	647	667	0.94
Non-Cytoplasmic	668	674	0.69
Transmembrane Helix	675	697	0.95
Cytoplasmic	698	729	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPFQKNESK ETLFSPVSIE EVPPRPPSPP KKPSPTICGS NYPLSIAFIV VNEFCERFSY  60
   61 YGMKAVLILY FLYFLHWNED TSTSIYHAFS SLCYFTPILG AAIADSWLGK FKTIIYLSLV 120
  121 YVLGHVIKSL GALPILGGQV VHTVLSLIGL SLIALGTGGI KPCVAAFGGD QFEEKHAEER 180
  181 TRYFSVFYLS INAGSLISTF ITPMLRGDVQ CFGEDCYALA FGVPGLLMVI ALVVFAMGSK 240
  241 IYNKPPPEGN IVAQVFKCIW FAISNRFKNR SGDIPKRQHW LDWAAEKYPK QLIMDVKALT 300
  301 RVLFLYIPLP MFWALLDQQG SRWTLQAIRM NRNLGFFVLQ PDQMQVLNPL LVLIFIPLFD 360
  361 FVIYRLVSKC GINFSSLRKM AVGMILACLA FAVAAAVEIK INEMAPAQPG PQEVFLQVLN 420
  421 LADDEVKVTV VGNENNSLLI ESIKSFQKTP HYSKLHLKTK SQDFHFHLKY HNLSLYTEHS 480
  481 VQEKNWYSLV IREDGNSISS MMVKDTESRT TNGMTTVRFV NTLHKDVNIS LSTDTSLNVG 540
  541 EDYGVSAYRT VQRGEYPAVH CRTEDKNFSL NLGLLDFGAA YLFVITNNTN QGLQAWKIED 600
  601 IPANKMSIAW QLPQYALVTA GEVMFSVTGL EFSYSQAPSG MKSVLQAAWL LTIAVGNIIV 660
  661 LVVAQFSGLV QWAEFILFSC LLLVICLIFS IMGYYYVPVK TEDMRGPADK HIPHIQGNMI 720
  721 KLETKKTKL