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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117938962, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDLLLFVF GCFELAGLVD CFSVHVSEDA GPGTAIAELQ RGSCALDQLL LPRFAETFLR  60
   61 PDAGVLTLSN APNCDSVLSN PFSVYAVVDC KDASGFRHLV TSRYDVHVHG KNCASTRKRE 120
  121 NKLDVEIISL TESSECREAH SAVFRVFDVL PGNPARCNVT RTSAFYMSDG SLFTSARLCF 180
  181 TRDSLLEFQM RCGGRAGAAH AHWRVGRGPF TQTHLSKVLR LAARSNSGLL SRRRRNVNNN 240
  241 PQFHPPMYQV SVPENQPAGT FVVVLKAVDP DEGEAGRLEY VLEALFDSRS NNLFAVDPAS 300
  301 GVVSTVEILD RETKDTHVFR VTAVDHGTPR RTAMATLTVT VSDTNDHDPA FEQQDYKESI 360
  361 RENLEIGYEV LTVRATDGDA PINGNILYHL LNSNGTNDVF EIDSRSGVIR TRGLVDRETV 420
  421 DSYMLMVEAN DQGRDPGPRS ATATVHIVVE DDNDNAPQFS EKRYIVQVPE DLTPNTEILQ 480
  481 VTATDQDRGN NAVVHFSIMS GNTRGQFYID AQTGKLDLVS QLDYEMNKEY TLRIRAQDGG 540
  541 RPPLSNISGL VTVQVLDIND NAPIFVSTPF QATVLENVPV GYSVIHIQAV DADAGDNSRL 600
  601 EYRLTETTAN FPFTINNSTG WIVVAAELDR ETVDFYNFGV EARDHGAPAM SSSASISMTI 660
  661 LDVNDNNPEF TQKAYYMRLN EDAAVGTSVV TVSAVDQDIN SVVTYQISSG NTRNRFSITS 720
  721 QSGGGLITLA LPLDYKLERQ YVLTVTASDG TRFDTAKVYV NVTDANTHRP VFQSSHYTVN 780
  781 INEDRPVGTT VVMISATDED TGENARITYI MDDSIPQFNI DADSGAVTTQ MELDYEDQVS 840
  841 YTLAITARDN GIPQKSDTTY LEILVNDVND NSPVFQRDRY LGSVMEDIPV FTSVLQVSAT 900
  901 DRDSGLNGRV FYTFQGGEDG DGDFIIESTS GIVRTLRRLD RENTAIYNLQ AFAVDKGVPA 960
  961 LKTAVDMQVT ILDVNDNPPV FEKDEFDIFV EENSPIGLVV AHISASDPDE GSNAQIMYQI1020
 1021 VEGNIPEVFQ LDIFSGELTA LTDLDYETRA EYVIVVQATS APLVSRATVH IKLIDKNDNV1080
 1081 PVLKNFQIIF NNYVTDKTNS FPSGVIGRIP AQDPDVSDQL HYSFEAGNEL KLVILNQSTG1140
 1141 EIRLSRALDN NRPLEASMKI SVSDGVHSVS AQCLLQVTVI TDEMLSNSIT LRLANASQER1200
 1201 FLSLLLAQFL EGVASVLSAS REDVVVFNIQ DDTDVSAGIL NVSLSVALPG QGSRGRGVSQ1260
 1261 GSEVEFFGSE ELQERLYLNR SLLAQISSQE VLPFDDNICL REPCENYMKC VSVLKFDSLA1320
 1321 PFVASDTILF RPIHPIAGLR CRCPLGFTGD YCETEIDLCY SRPCGAHGVC RSHEGGYTCH1380
 1381 CMQDYTGERC EISSRSGRCA EGVCKNGGTC LNLLVGGFRC ECPSGGFEKP FCLLSSRNFP1440
 1441 PQTFITFKGL RQRFHFTLSL SFATREPNGL LLYNGRFNEK HDFIAMEIVN QQIQLTFSAG1500
 1501 GTKTTVLPFI EGGVSDGHWH TAHVHYYNKP VLNRAGLPQG PSDQKVVVVT VDDCDSSVAL1560
 1561 RFGHVVGNYS CSAQGSQLGS KKSLDLTGPL LLGGGVPKLP EEFPVQNRQF IGCMKDLRID1620
 1621 ERHVDMAGFI ANNGTLPGCS AKRNFCNNNP CLNGGSCVSL WGSFRCDCAL GFGGRNCEKV1680
 1681 MSNPLRLQGK GLLWWADLAS VMTPPWHMEF MFRTRQPTAT VMHMSSGQQH NFTIQLREGF1740
 1741 VVTSVQRGED SVVSRVDDVT VSDGQWHHVS LELKGPATGG VTATLSLDYG LYTSSMDLDS1800
 1801 KLKGVRLKTL SVGGVSDGRN RVIGGFRGCI QGLRIGGDSS TPAFPSMPQA RVLNVESGCS1860
 1861 LPNTCGSNPC PAHSDCKDDW DAHSCRCHTG YYGNSCTDAC ALNPCEHQSA CSRRSSSAHG1920
 1921 YTCSCPSNYF GQYCEKKTDL PCPRGWWGEK SCGPCNCDTT KGFDADCNKT NGACRCKDNH1980
 1981 FRPPSSDTCV LCDCYAVGSL SRVCDRAVGQ CQCKPGVIGR QCDRCDNPFA EVSSSGCEVI2040
 2041 YDSCPQAIEA GIWWPRTKFG LPAAVACPKG SIGTAIRHCD EHKGWLSANL FNCTSVSFSK2100
 2101 LKTLSERLVR NASLMDSTNV QQTAALLFNA TKNTREFYGS DVKIAFHLLR AILRHESQQQ2160
 2161 GFNLTATQDV LFNEHLMHVG SAILRAETRG HWQTIQQTES GTDTLLRQFE EYTHTLAQNM2220
 2221 RRTYLNPFTI VTPSIVISID RLEKMNFAGA KLPRYQSLRG PRPLDLETAV TLPDSVFSPA2280
 2281 PEGKGHRHHS EPIIEPGRNH TANRKRRHPD ERQEDAIASI IIFHTLATLL PERYDTDKRS2340
 2341 LRVPKRPVIN TPVVSITVHD NEELLQHTLD KPIIVQFRLV TTEERSKPIC VFWNHSIVAA2400
 2401 SPGGWSSKGC EVVFRNSTHI SCQCYHMTSF AVLMDISRRE NGEILPVKLV TWSSVGATLF2460
 2461 FLLLTIIFLS CLRAANSNKT SIAKNGSSAL FIALLVFILG ISQADNPFVC TLMAILLHFF2520
 2521 WLCVFSWLFL EGLHVYRMLS ELRDINYGPM RFYYLIGWGV PAFITGLAVG LDPEGYGNPD2580
 2581 FCWLSLYDTL IWSFAGPIAF VVSMNLFLYI MASRASCSLR QKSCEKRDVP AAGLRTACTV2640
 2641 LFLVTVTCLL ALLSVNSDII LFHYLFAGFS CVQGVFIFFL RVVFNQEARD AMRYCCSGKR2700
 2701 PDHMIKSKPA AFLCSSNYVD GGLYHLPFAE SSVSLNGTHS SKTQQNYMPF SLRGNDMNSS2760
 2761 HLSLSEQNTL FKDKEQMDDP DSDSDSDLSE LEDDQSGSYA STHSSDSEEE EEGAFQEECW2820
 2821 ENLATSGSGK PLGVCEGEIR ATDETVDKAE DHGTENLLLL LPSLPHTQPH KGILKKKQLS2880
 2881 PIAERNAINR IHNQLSGDSA SSRGPSSNED RGGGARRNHV NGASVSGLMK TLDNDSSESE2940
 2941 C

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