YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148223061, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	277	0.98
Transmembrane Helix	278	303	0.84
Cytoplasmic	304	350	0.91
Transmembrane Helix	351	373	0.89
Non-Cytoplasmic	374	634	0.97
Transmembrane Helix	635	657	0.89
Cytoplasmic	658	665	0.95
Transmembrane Helix	666	689	0.91
Non-Cytoplasmic	690	695	0.86
Transmembrane Helix	696	719	0.91
Cytoplasmic	720	738	0.93
Transmembrane Helix	739	763	0.89
Non-Cytoplasmic	764	771	0.85
Transmembrane Helix	772	797	0.87
Cytoplasmic	798	843	0.98
Transmembrane Helix	844	866	0.87
Non-Cytoplasmic	867	1111	0.97
Transmembrane Helix	1112	1132	0.94
Cytoplasmic	1133	1138	0.86
Transmembrane Helix	1139	1161	0.90
Non-Cytoplasmic	1162	1167	0.73
Transmembrane Helix	1168	1186	0.91
Cytoplasmic	1187	1205	0.81
Transmembrane Helix	1206	1229	0.88
Non-Cytoplasmic	1230	1241	0.69
Transmembrane Helix	1242	1265	0.82
Cytoplasmic	1266	1325	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTGLRGWL LWALLLHVAQ SELYTPIHQP GYCAFYDECG KNPELSGGLA PLSNVSCLSN  60
   61 TPALRVTGEH LTLLQRICPR LYTGTTTYAC CSPKQLLSLE TSLAVTKALL TRCPTCSDNF 120
  121 VNLHCQNTCS PNQSLFINVT RVAGGGGGRP QAVVAYEAFY QDTFAQQTYD SCSRVRIPAA 180
  181 ATLAVGTMCG VYGSTLCNAQ RWLNFQGDTS NGLAPLDITF HLMEPGQALG SGMQALTGEI 240
  241 RPCNESQGNG TVACSCQDCA ASCPTIPQPQ ALDSTFYLGG LEGGLALVII LCSAFALLTT 300
  301 FLVGTRLASS CGKDKTPDPK AGMSLSDKLS LSTNVILSQC FQNWGTWVAS WPLTILLVSI 360
  361 AVVLALSGGL AFVELTTDPV ELWSAPSSQA RSEKAFHDQH FGPFLRTNQV ILTAPNRPSY 420
  421 HYDSLLLGPK NFSGVLASDL LLELLELQET LRHLQVWSPE EQRHISLQDI CFAPLNPHNA 480
  481 SLSDCCINSL LQYFQSNRTH LLLTANQTLT GQTSQVDWRD HFLYCANAPL TFKDGTALAL 540
  541 SCMADYGGPV FPFLAVGGYK GKDYSEAEAL IMTFSLNNYA PGDPRLAQAK LWEAAFLEEM 600
  601 KAFQRRTAGT FQVTFMAERS LEDEINRTTA EDLPIFGVSY IIIFLYISLA LGSYSSWRRV 660
  661 PVDSKVTLGL GGVAVVLGAV TAAMGFFSYL GVPSSLVILQ VVPFLVLAVG ADNIFIFVLE 720
  721 YQRLPRRPGE PREAHIGRAL GSVAPSMLLC SLSEAICFFL GALTPMPAVK TFALISGFAI 780
  781 VLDFLLQVSA FVALLSLDSR RQEASRLDVC CCVSAPKLPA PGQSEGLLLR VFRKFYVPVL 840
  841 LHRVTRAVVL LLFTGLFGVG LYFMCHIRVG LDQELALPKD SYLLDYFFFL NRYFEVGAPV 900
  901 YFVTTGGYNF SSEAGMNAVC SSAGCDSYSL TQKIQYATEF PEESYLAIPA SSWVDDFIDW 960
  961 LTPSSCCRLY AFGANKDKFC PSTVNSLACL KNCVNFTLGP VRPSVDQFHK YLPWFLSDPP1020
 1021 NIKCPKGGLA AYNTSVHLGS DGQVLASRFM AYHKPLRNSE DYTEALRVSR ALAANITAQL1080
 1081 RQVPGTDPAF EVFPYTITNV FYEQYLSVVP EGLFMLAICL LPTFVVCCLL LGMDLRSGLL1140
 1141 NLFSIVMILV DTVGFMALWG ISYNAVSLIN LVTAVGISVE FVSHITRSFA VSTRPTRLER1200
 1201 AKEATISMGS AVFAGVAMTN LPGILVLGLA KAQLIQIFFF RLNLLITVLG LLHGLVFLPV1260
 1261 VLSYLGPDIN AALVLDQKKT EEAIGAPAHL VPTSTASSTY VNYGFQHPAN GVVGDSSLPR1320
 1321 SGPDL