YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117606258, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.99
Transmembrane Helix	111	134	0.91
Non-Cytoplasmic	135	162	0.95
Transmembrane Helix	163	184	0.90
Cytoplasmic	185	212	0.86
Transmembrane Helix	213	232	0.93
Non-Cytoplasmic	233	275	0.84
Transmembrane Helix	276	299	0.87
Cytoplasmic	300	308	0.82
Transmembrane Helix	309	332	0.85
Non-Cytoplasmic	333	363	0.87
Transmembrane Helix	364	386	0.91
Cytoplasmic	387	398	0.83
Transmembrane Helix	399	421	0.85
Non-Cytoplasmic	422	475	0.80
Transmembrane Helix	476	497	0.79
Cytoplasmic	498	500	0.40
Transmembrane Helix	501	530	0.69
Non-Cytoplasmic	531	537	0.59
Transmembrane Helix	538	572	0.60
Cytoplasmic	573	795	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANITKKVSW SSRGDDRGER TPLLNGAEDS KLNRQLSGGG IFHIGRLSTV DLEEEITPEE  60
   61 DIIRSRPKEI PHNEKLLSLK YESLDYDNSE NQLFLEEERR MSQMGFRCLE ITRWVICGLI 120
  121 GLLTGLIACL IDIAVENLAG LKYFAVKQNI EKFTELGGLS LSLILWAVLN SAFVMVGAII 180
  181 VAFFEPIAAG SGIPQIKCYL NGVKVPRVVR LKTLVVKVFG VICSVAGGLA VGKEGPMIHS 240
  241 GAVVAAGVSQ GRSTSLKKDF KMFEYFRRDT EKRDFVSAGA AAGVSAAFGA PVGGVLFSLE 300
  301 EGASFWNQLL TWRIFFASMV SSFTLNFFLS IYHQKPGELS SPGLINFGRF DSDSVQYNLY 360
  361 EIPLFIIMGA LGGMLGALFN LLNYWLTIFR IRYIHRPCLQ VMEAMLVAAV TATVSFAMIY 420
  421 FSTECQPLGP DHTEEYPLQL FCADGEYNAM ATAFFNTPER SVRSLFHNPP GTYNPMTLGV 480
  481 FTLAYFLLAV WTYGLTVSAG VFIPSLLIGA AWGRLFGILL SFITTSKSIW ADPGKYALIG 540
  541 AAAQLGGIVR MTLSLTVILV EATGNVTYGF PIMLVLMTAK IVGDYFVEGL YDIHIKLQSV 600
  601 PFLHWEAPPT SHWLTAREVM SSQVTCFNRI EKVGTIVDVL SNTSTNHNGF PVVTHVTEID 660
  661 EPSKLCGLVL RSQLIVLLKH KVFVERAFSR FSQRKLQLKD FRDAYPRFPP IQSIHVSQDE 720
  721 RECMMDLTEF MNPTPYTVPQ ETSLPRVFKL FRALGLRHLV VVDNENRVVG LVTRKDLARY 780
  781 HLGKDGLEEL QLAQT