YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116487931, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAPKTQKPK GPNKKKIIIT VLMVVVVLAI LAVAAFLIKQ LIDSKYFFCT KSWKFIPLEK  60
   61 VCDGKNDCSE AEDESACVTM FKPNTTFPLR LYSANNVLQV LSPSDNTWKS VCSESFTQQH 120
  121 AETACQLLGY SVSPVFSSIA VGPLPSDLKI SFCMVGTTKP QTFQSAVSDR KVCSTGTVIS 180
  181 LSCSADCGLS RNQDRIVGGK DADIANWPWQ VSLQYSGQHT CGGSLVTPNW VVTAAHCFNG 240
  241 DGRKALSRWT VVSGITYLSS TPSSYVKEII VNSNYKPAES DFDITMIKLQ SPITVSESRR 300
  301 PVCLPPQNLG LKGGDGLVVT GWGHMAEKGG SLSSMLQKAQ IQVIDSAQCS SPTVYGSSIT 360
  361 PRMICAGVMA GGVDACQGDS GGPLVHLADR WVLVGVVSWG VGCARPGFPG VYTNVDQMLD 420
  421 WAHSVMQTYK

Type	Start	End	Confidence
Signal Peptide	1	34	0.55
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	430	0.99