YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC5A1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.59
Transmembrane Helix	29	49	0.90
Cytoplasmic	50	64	0.53
Transmembrane Helix	65	98	0.70
Non-Cytoplasmic	99	104	0.57
Transmembrane Helix	105	126	0.85
Cytoplasmic	127	140	0.88
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	174	0.60
Transmembrane Helix	175	195	0.86
Cytoplasmic	196	204	0.60
Transmembrane Helix	205	224	0.89
Non-Cytoplasmic	225	273	0.95
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.84
Transmembrane Helix	312	330	0.91
Non-Cytoplasmic	331	382	0.92
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.92
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	455	0.86
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	639	0.99
Transmembrane Helix	640	662	0.88
Non-Cytoplasmic	663	664	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTWSPKT TAVTRPVETH ELIRNAADIS IIVIYFVVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAASGIAIGG FEWNALVLVV VLGWLFVPIY 120
  121 IKAGVVTMPE YLRKRFGGQR IQVYLSLLSL LLYIFTKISA DIFSGAIFIN LALGLNLYLA 180
  181 IFLLLAITAL YTITGGLAAV IYTDTLQTVI MLVGSLILTG FAFHEVGGYD AFMEKYMKAI 240
  241 PTIVSDGNTT FQEKCYTPRA DSFHIFRDPL TGDLPWPGFI FGMSILTLWY WCTDQVIVQR 300
  301 CLSAKNMSHV KGGCILCGYL KLMPMFIMVM PGMISRILYT EKIACVVPSE CEKYCGTKVG 360
  361 CTNIAYPTLV VELMPNGLRG LMLSVMLASL MSSLTSIFNS ASTLFTMDIY AKVRKRASEK 420
  421 ELMIAGRLFI LVLIGISIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFWKRV 480
  481 NEPGAFWGLI LGLLIGISRM ITEFAYGTGS CMEPSNCPTI ICGVHYLYFA IILFAISFIT 540
  541 IVVISLLTKP IPDVHLYRLC WSLRNSKEER IDLDAEEENI QEGPKETIEI ETQVPEKKKG 600
  601 IFRRAYDLFC GLEQHGAPKM TEEEEKAMKM KMTDTSEKPL WRTVLNVNGI ILVTVAVFCH 660
  661 AYFA