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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116095803, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.49
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRKYIKNS ANARQRFSIR KLTIGTASVL LGTVFYLGVN ETTVQAASAD SAENEVQTVA  60
   61 TSPILKNKAT TVKSSETTDA KTPVVQTKTV ESSKTDVENK ADKSAVQATE VNVDKKDDEK 120
  121 VATKDINSAE KKQQNTQTLD TLKAVPTNTA ELNESKVQIN SEVSKNSSKI LNNSFVSLQS 180
  181 DSSDKNLKVS ASLSGTEYNP SQNQTIQMTF QVSNNKAGDQ FRLHFDSGAY MVTPTALPSA 240
  241 FGSMNKVQNS DGSYDVTYSL NKSATINQTL SIGFLNEAQA KAMPYNAGTE LKNIQIFYNE 300
  301 NSQPIKTLTF NQVVVPQLNP RWRRISPSSS AVKKLFPNYD YKWQLTLGQK TGINGDISSG 360
  361 GTSGPSPLIN HETTITIPVP ESFVLNTEKT IAENSSSATV TQAGKGKDII VKLANTTLSS 420
  421 SVLNIWGHFD MVQPAEDTTV SGSKEIEVSE DVGAKQPLTG NAGIFKEVIQ GSNEHVPVGE 480
  481 ALRGYIGGAH NGYDGPYQKG QVPYTASHKE IVLYNYSVGN LQGRPVNDVH LKITVPDGVT 540
  541 ITKLVGTNVK DFNYQINYVD NSVKSGMISN GEAVAIENGT NISNIVLTIP QLGIDSLNPQ 600
  601 GLIWGQGIDV GFSLYGFVNE NYRNGQKVNL GDTLTSDLYP YFDTPSDEGY YTASQSVVAE 660
  661 EKDSITINFT ASNYNYAPGN YGGTLTIGGW YAKKAVDPIF YLVMPSNALA DLSTSSFKFG 720
  721 ETKPKVSSFS VNGYQVVKVD YTGIKITGGD ITIYLKNLPD SSSVTTNNGH VYLYAQSNIV 780
  781 KDYSLNEYPT VKDSDVNYVE GKTSALDLGS FNWITQLGQG LTSVELAQGN EDGNLDLNGK 840
  841 SDDKKSDTMT YTVSVINGQK YDIKNTHVLI NLPTESSSSF SFVLNENNSV KIIDLNTQQE 900
  901 IAGKISYYSN LSDLKDHIVG GAVNSAKNAK SILVDIDNVP SNHSYRIVLN GTDPTLGYDA 960
  961 GKTGILSSVV WSDNTQSLDS LFIESTSNNA SRITISGNSV VNIAFKYKDS ADTDQVVAAD1020
 1021 SIELKNNQDL LSYGPEKVLA ALKKLQDAKK IPEDYVVKDA TQPQEIINAD HGDYPSGIKN1080
 1081 EKAQLNQQAK VYFDGDTLVY ELVKNTQSAT LRFYDDTDHK FIELAPDVNI TGKSDADISF1140
 1141 EIPAKYDFSK YKFVMVARGN DPTQSDDKLA GNQLSEINYG KFDNDINEDQ IFIAHFIHKT1200
 1201 ASVKDTKTVT ETIHYVYEDG TKAHDDVQKE VTFTKTGTED LVTGKEMSSW SKPQEFEEVV1260
 1261 SSEIAGYTPD QEKINSVTVS HDSKDVVRTV TYKANPQKIT VNYIDDTTGK TLSTKDLNGK1320
 1321 SDEKSDYATK DSIAEYEKQH YDLVSDETNG SELVFDHDDK VDQVYNVHFT HHMTSINDTK1380
 1381 KINETIHYVY EDGTKAHDDI NGQPVIFTHD GERDEVTNKE HWNDWKSEKD SFDEVNSPKI1440
 1441 AGYTPDFATI EKITVKPEDS DVVKTVIYKA NPQKITVNYI DDTTGKTLST KELNGKSDEK1500
 1501 SDYTTKDSIA EYEKQHYDLV SDETNGSELV FDHDDKVDQV YNVHFTHHMT SINDTKKINE1560
 1561 TIHYVYEDGT KAHDDINGQP VIFTHDGERD EVTNKEHWND WKSEKDSFDA VKSPEVAGYT1620
 1621 PNADAIPEIK VKPTDSDIVR TVTYKADAQK AKLRFYDDTD HKFIELAPDI NTTGKSAESI1680
 1681 DFDIPYDFSN YNFIEVDSAK DPADKSNKMN GDTLDKVNYG NFDKDKYTDQ IFIAHFTHKI1740
 1741 APVKDTKTVT ETVYYVYENG TKAHDDVQKE ATFTKTGTKD LVTGEEKSNW SKSKEFEEVV1800
 1801 SPEIAGYTPD QEKIDSVTVS HDSKDIVRTV TYKANPQKIT VNYVDDTTGK TLATKELNGK1860
 1861 SDEKSGYTTS DSIANYEKQH YDLVSDETNG SELIFDHDDK VDQVYNVHLI HHLSSISDTK1920
 1921 TINETIHYVY EDGKTASPDV VGTPVVFTRD GERDEVTNED MWNDWKTKKD SFDKVQSPEI1980
 1981 AGYIPNVDAV PEIKVKPTDS DIDRTVTYKA DEQKAKLRFY DDTDHKFIEL APDINTLGKS2040
 2041 NENISFNVPY NLSNYSFIEV DSSNDPADKS DKLNGDTLDK VIYGRFDKDK NVDQVFIAHF2100
 2101 IHKTEPIKDT KVVTETVHYV YEDGTKAHED VQKQVTFTKT GNKDLVTGKE KSSWSGPQEF2160
 2161 SEVISPEIQG YTPDQGKINS EVVSQDSNDI ERTVIYKAKP VEPTTPDKPA QPSEPTKPEE2220
 2221 PTTPDKPARP TEPTKPEEPT TPDKPAQPSE PTKPEEPITP DKPAQPSEPT KPEEPTTPDK2280
 2281 PARPTEPTKP EEPTTPDKPA QPSEPIKPEE PTTPDKPAQP SEPTEPKEPT TPDKPTQPSE2340
 2341 PTKPEEQTIS NKSNQSSETE SSKTAMQINK SNKSKNVEAT NISTSLTRTT SAAKTSRNAT2400
 2401 TTKHINRART TLPQTGSRKT DVSLAGLALA SAGALIGLIG GKERKRRKR

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