YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21748616
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWLWGREWAK VTQVAPARRT PNAREPRHWT LPGPSWIDKN QGASAPWAQL CPTPQSHGAI  60
   61 SLAASTKGPS VFPLAPCSRS TSGGTAALGC LVKDYFPEPV TVSWNSGALT SGVHTFPAVL 120
  121 QSSGLYSLSS VVTVPSSSLG TQTYTCNVNH KPSNTKVDKR VELKTPLGDT THTCPRCPEP 180
  181 KSCDTPPPCP RCPEPKSCDT PPPCPRCPEP KSCDTPPPCP RCPAPELLGG PSVFLFPPKP 240
  241 KDTLMISRTP EVTCVVVDVS HEDPEVQFKW YVDGVEVHNA KTKPREEQFN STFRVVSVLT 300
  301 VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KTKGQPREPQ VYTLPPSREE MTKNQVSLTC 360
  361 LVKGFYPSDI AVEWESSGQP ENNYNTTPPM LDSDGSFFLY SKLTVDKSRW QQGNIFSCSV 420
  421 MHEALHNRFT QKSLSLSPEL QLEESCAEAQ DGELDGLWTT ITIFITLFLL SVCYSATVTF 480
  481 FKVKWIFSSV VDLKQTIIPD YRNMIGQGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	457	0.93
Transmembrane Helix	458	481	0.70
Cytoplasmic	482	509	0.72