YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29734033, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPSGISTW LSLPVSTPAS ITSIRVTQKS SGPWAFSSCT YVSGPGVCIS SLSCSRVGSS  60
   61 SFRGGLGGGY GGASGMGGII AIMVNQSLLS PLNLEVDPNI QAVCTQEKEQ IKTLNNKFAS 120
  121 FIDKVWFLEQ QNKVLETKWS LLQQQKMARS NMDNMLESYI NNLRRQLETL GQEKLKLEAE 180
  181 LGNMQGLGED FKNKYEDEIN KHTEVENEFV LIKKDVDEAY MNKAELESLL EGLTDEINFL 240
  241 RQLYEEEIRE LQSQISDMSM VLSMDYSCSR DMDSIIPEVK VQYEEIANCS RAEAESMYQI 300
  301 KYEELQTLAG KYGDDLSRTK TEISEMNRNI SWLQAETEGL KGQRASLEAA ITDAEQRGEL 360
  361 AVKDANAKLS ELEAALQRAK QDMMGQLREY QELMNVGLTL DIEIATYRKL LEGEESRLES 420
  421 GMQNVSIHTK TTSSYAGGLS SAYGGLTSPG IIYRLGSSFG SAAGSSSFSR TSSTRAVVVR 480
  481 KIETHDGKLE SESSDVLSK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.57
Transmembrane Helix	7	24	0.33
Non-Cytoplasmic	25	33	0.53
Transmembrane Helix	34	54	0.40
Cytoplasmic	55	63	0.63
Transmembrane Helix	64	84	0.72
Non-Cytoplasmic	85	499	0.97