YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.91
Transmembrane Helix	25	44	0.91
Cytoplasmic	45	60	0.72
Transmembrane Helix	61	81	0.84
Non-Cytoplasmic	82	118	0.88
Transmembrane Helix	119	137	0.90
Cytoplasmic	138	146	0.79
Transmembrane Helix	147	166	0.93
Non-Cytoplasmic	167	180	0.87
Transmembrane Helix	181	201	0.93
Cytoplasmic	202	221	0.85
Transmembrane Helix	222	237	0.93
Non-Cytoplasmic	238	254	0.77
Transmembrane Helix	255	274	0.95
Cytoplasmic	275	284	0.79
Transmembrane Helix	285	304	0.91
Non-Cytoplasmic	305	308	0.68
Transmembrane Helix	309	327	0.86
Cytoplasmic	328	337	0.68
Transmembrane Helix	338	357	0.96
Non-Cytoplasmic	358	388	0.88
Transmembrane Helix	389	413	0.91
Cytoplasmic	414	505	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRQPTIRMK PDKQLDCSLS QDDGVWMMAS SFIIFTMTAG FGLLESGRVS SKDEVNCMVK  60
   61 NVFDVIFGGL AYWMFGYGLT FGDSKHQLGR YVGFGDFFFD PERVSDDDST DEKGISYSLF 120
  121 IFQMSFATTT STIVSAGMSE RIHLKSHCFI SFFITLVHSV AGHWVWDQEG VFRMMGVVDS 180
  181 AGCSAVHLVG GVSGLVATLY LKPRRNRFAK NGIRTVSDPT KAILGFLMIW WGWLAFNTSS 240
  241 NYAVTHGQWT EGMRSAVGTI LASAGGGVVT VIITRLSTKK IQMDMLIDGM LASLVASTGG 300
  301 CLYFTPWQAT LVGAIGSSLA LAAYPVTEWL KIDDPVGVFP VHVVGSIWGM IAPAIFVYRR 360
  361 PMNFGPPECD FQTSDEINGL LYGGGFYLLF LQSFVILVIG TYSAICAFII LFLIHHSPVG 420
  421 LRVDKYTEEL GADLIEHGLA GFNVMTYTIE KKLDTKTLSA VLMIIVRWRA KAKLGAQRRK 480
  481 KIHDSGSVAP QQAESVEMNV IHRRH