YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115515610, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	49	0.84
Non-Cytoplasmic	50	193	0.98
Transmembrane Helix	194	217	0.91
Cytoplasmic	218	235	0.83
Transmembrane Helix	236	260	0.87
Non-Cytoplasmic	261	270	0.83
Transmembrane Helix	271	294	0.91
Cytoplasmic	295	314	0.90
Transmembrane Helix	315	339	0.90
Non-Cytoplasmic	340	354	0.81
Transmembrane Helix	355	375	0.92
Cytoplasmic	376	387	0.80
Transmembrane Helix	388	408	0.86
Non-Cytoplasmic	409	412	0.77
Transmembrane Helix	413	431	0.93
Cytoplasmic	432	441	0.72
Transmembrane Helix	442	458	0.55
Non-Cytoplasmic	459	592	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEVSSSISN PGTSGFTCYT RRHRLPLMAQ RIFTLILLLC STSVFAGLFD APGRSQFVPA  60
   61 DQAFAFDFQQ NQHDLNLTWQ IKDGYYLYRK QIRITPEHAK IADVQLPQGV WHEDEFYGKS 120
  121 EIYRDRLTLP VTINQASAGA TLTVTYQGCA DAGFCYPPET KTVPLSEVVA NNEASQPVSV 180
  181 PQQEQPTAQL PFSALWALLI GIGIAFTPCV LPMYPLISGI VLGGKQRLST ARALLLTFIY 240
  241 VQGMALTYTA LGLVVAAAGL QFQAALQHPY VLIGLAIVFT LLAMSMFGLF TLQLPSSLQT 300
  301 RLTLMSNRQQ GGSPGGVFIM GAIAGLICSP CTTAPLSAIL LYIAQSGNMW LGGGTLYLYA 360
  361 LGMGLPLMLI TVFGNRLLPK SGPWMEQVKT AFGFVILALP VFLLERVIGD IWGLRLWSAL 420
  421 GVAFFGWAFI TSLQAKRGWM RVVQIILLAA ALVSVRPLQD WAFGETHTAQ TQTHLNFTQI 480
  481 KTVDELNQAL VEAKGKPVML DLYADWCVAC KEFEKYTFSD PQVQKALADT VLLQANVTAN 540
  541 DAQDVALLKH LNVLGLPTIL FFDGQGQEHP QARVTGFMDA ETFSAHLRDR QP