YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9719374
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.97
Transmembrane Helix	79	99	0.88
Non-Cytoplasmic	100	150	0.93
Transmembrane Helix	151	171	0.89
Cytoplasmic	172	177	0.87
Transmembrane Helix	178	198	0.93
Non-Cytoplasmic	199	205	0.77
Transmembrane Helix	206	228	0.84
Cytoplasmic	229	239	0.84
Transmembrane Helix	240	262	0.90
Non-Cytoplasmic	263	268	0.79
Transmembrane Helix	269	289	0.95
Cytoplasmic	290	328	0.91
Transmembrane Helix	329	347	0.82
Non-Cytoplasmic	348	369	0.85
Transmembrane Helix	370	390	0.85
Cytoplasmic	391	406	0.76
Transmembrane Helix	407	426	0.95
Non-Cytoplasmic	427	431	0.82
Transmembrane Helix	432	453	0.91
Cytoplasmic	454	461	0.78
Transmembrane Helix	462	485	0.87
Non-Cytoplasmic	486	498	0.89
Transmembrane Helix	499	519	0.94
Cytoplasmic	520	536	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGAMTPPR PVQPARPGGF GLSGRRSLLC QVASTPAHVG VMRSPVRDLA RNDGEESTDR  60
   61 TPLLPGAPRA EAAPVCCSAR YNLAILAFFG FFIVYALRVN LSVALVDMVD SNTTLEDNRT 120
  121 SKACPEHSAP IKVHHNQTGK KYQWDAETQG WILGSFFYGY IITQIPGGYV ASKIGGKMLL 180
  181 GFGILGTAVL TLFTPIAADL GVGPLIVLRA LEGLGEGVTF PAMHAMWSSW APPLERSKLL 240
  241 SISYAGAQLG TVISLPLSGI ICYYMNWTYV FYFFGTIGIF WFLLWIWLVS DTPQKHKRIS 300
  301 HYEKEYILSS LRNQLSSQKS VPWVPILKSL PLWAIVVAHF SYNWTFYTLL TLLPTYMKEI 360
  361 LRFNVQENGF LSSLPYLGSW LCMILSGQAA DNLRAKWNFS TLCVRRIFSL IGMIGPAVFL 420
  421 VAAGFIGCDY SLAVAFLTIS TTLGGFCSSG FSINHLDIAP SYAGILLGIT NTFATIPGMV 480
  481 GPVIAKSLTP DNTVGEWQTV FYIAAAINVF GAIFFTLFAK GEVQNWALND HHGHRH