YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114690685
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAPGLQPSV LDAGGVWWRA GVNVEEAEGA GEPAVGAGAG VHAGPGAVSG GAGRGGRWSR  60
   61 SGPAGARRGG ASVRLLVADV TARASADCSA ATAAAAVAVA AAAAAAAAAA AAAMAQYKGA 120
  121 ASEAGRAMHL MKKREKQREQ MEQMKQRIAE ENIMKSNIDK KFSAHYDAVE AELKSSTVGL 180
  181 VTLNDMKAKQ EALVKEREKQ LAKKEQSKEL QMKLEKLREK ERKKEAKRKI SSLSFTLEEE 240
  241 EEGGEEEEEA AMYEEEMEGE EITTKKRKLG KNPDVDTSFL PDRDREEEEN RLREELRQEW 300
  301 EAKQEKIKSE EIEITFSYWD GSGHRRTVKM RKGNTMQQFL QKALEILRKD FSELRSAGVE 360
  361 QLMYIKEDLI IPHHHSFYDF IVTKARGKSG PLFNFDVHDD VRLLSDATVE KDESHAGKVV 420
  421 LRSWYEKNKH IFPASRWEPY DPEKKWDKYT IR

Type	Start	End	Confidence
Cytoplasmic	1	90	0.49
Transmembrane Helix	91	113	0.56
Non-Cytoplasmic	114	452	0.89