YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114627080
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.68
Transmembrane Helix	16	39	0.80
Non-Cytoplasmic	40	72	0.60
Transmembrane Helix	73	95	0.82
Cytoplasmic	96	109	0.60
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	135	0.52
Transmembrane Helix	136	155	0.88
Cytoplasmic	156	164	0.53
Transmembrane Helix	165	186	0.84
Non-Cytoplasmic	187	224	0.50
Transmembrane Helix	225	247	0.94
Cytoplasmic	248	256	0.62
Transmembrane Helix	257	278	0.93
Non-Cytoplasmic	279	297	0.69
Transmembrane Helix	298	318	0.91
Cytoplasmic	319	334	0.71
Transmembrane Helix	335	354	0.66
Non-Cytoplasmic	355	358	0.81
Transmembrane Helix	359	379	0.94
Cytoplasmic	380	401	0.90
Transmembrane Helix	402	422	0.92
Non-Cytoplasmic	423	437	0.87
Transmembrane Helix	438	460	0.88
Cytoplasmic	461	474	0.82
Transmembrane Helix	475	493	0.92
Non-Cytoplasmic	494	502	0.67
Transmembrane Helix	503	523	0.65
Cytoplasmic	524	538	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRECPSPAP GPGAPLSGSV LAEAAVVFAV VLSIHATVWD RYSWCAVALA VQAFYVQYKW  60
   61 DRLLQQGSAV FQFRMSANSG LLPASMVMPL LGLVMKERCQ TAGNPFFERF GIVVAATGMA 120
  121 VALFSSVLAL GITRPVPTNT CVILGLAGGV IIYIMKHSLS VGEVIEVLEV LLIFVYLNMI 180
  181 LLYLLPRCFT PGEALLVLGG ISFVLNQLIK RSLTLVESQG DPVDFFLLVV VVGMVLMGIF 240
  241 FSTLFVFMDS GTWASSIFFH LMTCVLSLGV VLPWLHRLIR RNPLLWLLQF LFQTDTRIYL 300
  301 LAYWSLLATL ACLVVLYQNA KRSSSESKKH QAPTIARKYF HLIVVATYIP GIIFDRPLLY 360
  361 VAATVCLAVF IFLEYVRYFR IKPLGHTLRS FLSLFLDERD SGPLILTHIY LLLGMSLPIW 420
  421 LIPRPCTQKG SLGGARALVP YAGVLAVGVG DTVASIFGST MGEIRWPGTK KTFEGTMTSI 480
  481 FAQIISVALI LIFDSGVDLN YSYAWILGSI STVSLLEAYT TQIDNLLLPL YLLILLMA