YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114652732
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTVKMEGH ETSDWNSYYA DTQEAYSVPV SNMNSGLGSM NSMNTYMTMN TMTTSGNMTP  60
   61 ASFNMSYANP GLGAGLSPGA VAGMPGGSAG AMNSMTAAGV TAMGTALSPS GMGAMGAQQA 120
  121 ASMNGLGPYA AAMNPCMSPM AYAPSNLGRS RAGGGGDAKT FKRSYPHAKP PYSYISLITM 180
  181 AIQQAPSKML TLSEIYQWIM DLFPYYRQNQ QRWQNSIRHS LSFNDCFVKV ARSPDKPGKG 240
  241 SYWTLHPDSG NMFENGCYLR RQKRFKCEKQ PGAGGGGGSG SGGSGAKGGP ESRKDPSGAS 300
  301 NPSADSPLHR GVHGKTGQLE GAPAPGPAAS PKTLDHPQTL DHSGATATGG ASELKTPASS 360
  361 TAPPISSGPG ALASVPASHP AHGLAPLESQ LLLKGDPHYS FNHPFSINNL MSSSEQQHKL 420
  421 DFKAYEQALQ YSPYGSTLPA SLPLGSASVT TRSPIEPSAL EPAYYQGVYS RPVLNTS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.55
Transmembrane Helix	67	82	0.44
Non-Cytoplasmic	83	477	0.67