YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114650589
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRSTGKSSY VALYSGKSSY VALVTSFCWG KKFKWPESGS SPGQKRRVAP PGSPRRGPPS  60
   61 HPPPRRGGQG ADSRDHDSRP RWWGFRAGPT RGQRGGWTAQ PSAPGRTCST SPAPVPLYPH 120
  121 LSDQIPLQST ARGVASFEGP PGKTQRAWKA PGVQSRERLE VELLPSAGNP GESAAIADPP 180
  181 GVRRGRTPLT AHAPFVSGEG PRGAGFVAPP RVRLRGRWGS HFSFPSPGAL WGSEPGGTMF 240
  241 TSTGSSGLYK APLSKSLLLV PSALSLLLAL LLPHCQKLFV YDLHAVKNDF QIWRLICGRI 300
  301 ICLDLKDTFC SSLLIYNFRI FERRYGSRKF ASFLLGSWVL SALFDFLLIE AMQYFFGITA 360
  361 ASNLPSGFLA PVFALFVPFY CSIPRVQVAQ ILGPLSITNK TLIYILGLQL FTSGSYIWIV 420
  421 AISGLMSGLC YDSKMFQVHQ VLCIPSWMAK FFSWTLEPIF SSSEPTSEAR IGMGATLDIQ 480
  481 RQQRMELLDR QLMFSQFAQG RRQRQQQGGM INWNRLFPPL RQRQNVNYQG GRQSEPAAPP 540
  541 LEVSEEQVAR LMEMGFSRGD ALEALRASNN DLNVATNFLL QH

Type	Start	End	Confidence
Cytoplasmic	1	220	0.75
Transmembrane Helix	221	238	0.49
Non-Cytoplasmic	239	252	0.56
Transmembrane Helix	253	275	0.69
Cytoplasmic	276	329	0.81
Transmembrane Helix	330	349	0.93
Non-Cytoplasmic	350	363	0.65
Transmembrane Helix	364	383	0.86
Cytoplasmic	384	401	0.78
Transmembrane Helix	402	422	0.89
Non-Cytoplasmic	423	435	0.68
Transmembrane Helix	436	454	0.48
Cytoplasmic	455	582	0.56