YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123996419, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.97
Transmembrane Helix	75	98	0.87
Non-Cytoplasmic	99	109	0.86
Transmembrane Helix	110	134	0.78
Cytoplasmic	135	142	0.86
Transmembrane Helix	143	161	0.77
Non-Cytoplasmic	162	175	0.71
Transmembrane Helix	176	197	0.76
Cytoplasmic	198	212	0.63
Transmembrane Helix	213	235	0.54
Non-Cytoplasmic	236	259	0.64
Transmembrane Helix	260	278	0.91
Cytoplasmic	279	301	0.71
Transmembrane Helix	302	324	0.84
Non-Cytoplasmic	325	344	0.66
Transmembrane Helix	345	364	0.90
Cytoplasmic	365	378	0.62
Transmembrane Helix	379	398	0.79
Non-Cytoplasmic	399	407	0.71
Transmembrane Helix	408	430	0.85
Cytoplasmic	431	442	0.64
Transmembrane Helix	443	460	0.69
Non-Cytoplasmic	461	508	0.86
Transmembrane Helix	509	528	0.93
Cytoplasmic	529	549	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTISHKDS SRQRRPGNFS HSLDMKSGPL PPGGWDDSHL DSAGREGDRE ALLGDTGTGD  60
   61 FLKAPQSFRA ELSSILLLLF LYVLQGIPLG LAGSIPLILQ SKNVSYTDQA FFSFVFWPFS 120
  121 LKLLWAPLVD AVYVKNFGRR KSWLVPTQYI LGLFMIYLST QVDRLLGNTD DRTPDVIALT 180
  181 VAFFLFEFLA ATQDIAVDGW ALTMLSRENV GYASTCNSVG QTAGYFLGNV LFLALESADF 240
  241 CNKYLRFQPQ PRGIVTLSDF LFFWGTVFLI TTTLVALLKK ENEVSVVKEE TQGITDTYKL 300
  301 LFAIIKMPAV LTFCLLILTA KIGFSAADAV TGLKLVEEGV PKEHLALLAV PMVPLQIILP 360
  361 LIISKYTAGP QPLNTFYKAM PYRLLLGLEY ALLVWWTPKV EHQGGFPIYY YIVVLLSYAL 420
  421 HQVTVYSMYV SIMAFNAKVS DPLIGGTYMT LLNTVSNLGG NWPSTVALWL VDPLTVKECV 480
  481 GASNQNCRTP DAVELCKKLG GSCVTALDGY YVESIICVFI GFGWWFFLGP KFKKLQDEGS 540
  541 SSWKCKRNN