YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114637062
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	177	0.59
Transmembrane Helix	178	200	0.87
Cytoplasmic	201	220	0.59
Transmembrane Helix	221	241	0.84
Non-Cytoplasmic	242	253	0.73
Transmembrane Helix	254	275	0.92
Cytoplasmic	276	371	0.90
Transmembrane Helix	372	392	0.90
Non-Cytoplasmic	393	412	0.85
Transmembrane Helix	413	436	0.88
Cytoplasmic	437	445	0.90
Transmembrane Helix	446	470	0.88
Non-Cytoplasmic	471	483	0.78
Transmembrane Helix	484	505	0.89
Cytoplasmic	506	520	0.83
Transmembrane Helix	521	546	0.73
Non-Cytoplasmic	547	564	0.68
Transmembrane Helix	565	590	0.78
Cytoplasmic	591	707	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDVWIQIL ERRVKEGESL HVAGRVPSSN KVQHSANPKI VYPGEKESLF NSPVALQARD  60
   61 LFELRRGRER SWAAFRLHHP RVSAARLRWT WDPQTWEDGG DLVSSSRAIS GHLYLPSTSP 120
  121 DPEAWGQGGE VRCQQWKDSA NNMPKQVEVR MHDSHLGSEE PKHRHLGLRL CDKLGKNLLL 180
  181 TLTVFGVILG AVCGGLLRLA SPIHPDVVML IAFPGDILMR MLKMLILPLI ISSLITGLSG 240
  241 LDAKASGRLG TRAMVYYMST TIIAAVLGVI LVLAIHPGNP KLKKQLGPGK KNDEVSSLDA 300
  301 FLDLIRNLFP ENLVQACFQQ IQTVTKKVLV APPPDEEANA TSAVVSLLNE TVTEVPEETK 360
  361 MVIKKGLEFK DGMNVLGLIG FFIAFGIAMG KMGDQAKLMV DFFNILNEIV MKLVIMIMWY 420
  421 SPLGIACLIC GKIIAIKDLE VVARQLGMYM VTVIIGLIIH GGIFLPLIYF VVTRKNPFSF 480
  481 FAGIFQAWIT ALGTASSAGT LPVTFRCLEE NLGIDKRVTR FVLPVGATIN MDGTALYEAV 540
  541 AAIFIAQMNG VVLDGGQIVT VSLTATLASV GAASIPSAGL VTMLLILTAV GLPTEDISLL 600
  601 VAVDWLLDRM RTSVNVVGDS FGAGIVYHLS KSELDTIDSQ HRVHEDIEMT KTQSIYDDMK 660
  661 NHRESNSNQC VYAAHNSVIV DECKVTLAAN GKSADCSVEE EPWKREK