YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114623963
Protein type:	Globular with Signal Peptide
Type Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLGEASLP RESENPGSPS LALGAATLPA GAQFTDALRL HRGHPEALTS PQSIASCSRL  60
   61 LDPNHLSWGT PRLEAGLARG SSRGLARAPA PETSPCTPPP WPPQPRLRHL ERLTGPQEAA 120
  121 GSVPSRLPLR KPARHTSLLK PVAVAVVVGA FFGHERAAFP PANHTRRSEG ALARSPPEVG 180
  181 GGGEAAAPSP ESERNSRAVA TDSRGRSHLS KSQPVRGLSS PGFALSTLLP AQLRGGAERG 240
  241 AACESPAAPD PSLGAACRPR PQAQSAVPRR VMPNTAMKKK VLLMGKSGSG KTSMRSIIFA 300
  301 NYIARDTRRL GATIDVEHSH VRFLGNLVLN LWDCGGQDTF MENYFTSQRD NIFRNVEVLI 360
  361 YVFDVESREL EKDMHYYQSC LEAILQNSPD AKIFCLVHKM DLVQEDQRDL IFKEREEDLR 420
  421 RLSRPLECAC FRTSIWDETL YKAWSSIVYQ LIPNVQQLEM NLRNFAQIIE ADEVLLFERA 480
  481 TFLVISHYQC KEQRDVHRFE KISNIIKQFK LSCSKLAASF QSMEVRNSNF AAFIDIFTSN 540
  541 TYVMVVMSDP SIPSAATLIN IRNARKHFEK LERVDGPKHS LLMR

Type	Start	End	Confidence
Signal Peptide	1	32	0.45
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	584	0.94