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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114614720
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGGGVRHG GRDITGGGQE GREFLLHYPC SKSTAINSRC LTPFKSEQSD DVYESHLSLS  60
   61 DIPRGHLTLA PRSELDARPF KEASKTKAFK GINRFLQLLS MGELGPADSH VMEKPVAAGH 120
  121 TSADAQFKVA LHSPRAPGCS IPCHLKIHFS LGKNHSLRSK CTCSLAPAFK GQPASLQPPP 180
  181 EGPELDAWVT GPGGILPVKV LLLLSCAHHL QGLPLRPLLD KIGFRARLSR HPRLQADLGL 240
  241 ILRPGWFWRV ARVGGGPSRA PRRQERRFPG RTRVGGGGGG GGEAAASKVQ APLLQRPRVQ 300
  301 RPCQTRARFE AEMDLEAAKN GTAWRPTSAE GDFELGNSSK QKRKKTKTVK MIGVLTLFRY 360
  361 SDWQDKLFMS LGTIMAIAHG SGLPLMMIVF GEMTDKFVDT AGNFSFPVNF SLSRLNPGKI 420
  421 LEEEMTRYAY YYSGLGAGVL VAAYIQVSFW TLAAGRQIRK IRQKFFHAIL RQEIGWFDIN 480
  481 DTTELNTRLT DDISKISEGI GDKVGMFFQA VATFFAGFIV GFIRGWKLTL VIMAISPILG 540
  541 LSAAVWAKIL SAFSDKELAA YAKAGAVAEE ALGAIRTVIA FGGQNKELER YQKHLENAKE 600
  601 IGIKKAISAN ISMGIAFLLI YASYALAFWY GSTLVISKEY TIGNAMTVFF SILIGAFSVG 660
  661 QAAPCIDAFA NARGAAYVIF DIIDNNPKID SFSERGHKPD SIQGNLEFND VHFSYPSRAN 720
  721 VKILKGLNLK VQSGQTVALV GSSGCGKSTT VQLIQRLYDP DEGTINIDGQ DIRNFNVNYL 780
  781 REIIGVVSQE PVLFSTTIAE NIRYGRGNVT MDEIKKAVKE ANAYEFIMKL PQKFDTLVGE 840
  841 RGAQLSGGQK QRIAIARALV RNPKILLLDE ATSALDTESE AEVQAALDKA REGRTTIVIA 900
  901 HRLSTVRNAD VIAGFEDGVI VEQGSHSELM KKEGVYFKLV NMQTSGSQIQ SEEFELNDEK 960
  961 AATGMAPNGW KSRLFRHSTQ KNLKNSQMCQ KSLDVETDGL EANVPPVSFL KVLKLNKTEW1020
 1021 PYFVVGTVCA IANGGLQPAF SVIFSEIIAI FGPGDDAVKQ QKCNIFSLIF LFLGIISFFT1080
 1081 FFLQGFTFGK AGEILTRRLR SMAFKAMLRQ DMSWFDDHKN STGALSTRLA TDAAQVQGAT1140
 1141 GTRLALIAQN IANLGTGIII SFIYGWQLTL LLLAVVPIIA VSGIVEMKLL AGNAKRDKKE1200
 1201 LEAAGKIATE AIENIRTVVS LTQERKFESM YVEKLYGPYR NSVQKAHIYG ITFSISQAFM1260
 1261 YFSYAGCFRF GAYLIVNGHM RFRDVILVFS AIVFGAVALG HASSFAPDYA KAKLSAAHLF1320
 1321 MLFERQPLID SYSEEGLKPD KFEGNITFNE VVFNYPTRAN VPVLQGLSLE VKKGQTLALV1380
 1381 GSSGCGKSTV VQLLERFYDP LAGTVLLDGQ EAKKLNVQWL RAQLGIVSQE PILFDCSIAE1440
 1441 NIAYGDNSRV VSQDEIVSAA KAANIHPFIE TLPHKYGTRV GDKGTQLSGG QKQRIAIARA1500
 1501 LIRQPQILLL DEATSALDTE SEKVVQEALD KAREGRTCIV IAHRLSTIQN ADLIVVFQNG1560
 1561 RVKEHGTHQQ LLAQKGIYFS MINLEDPIWG LLRHLKFES

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