YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114581421
Protein type: Globular with Signal Peptide
Type Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGERLPSS AASSTTPTSS STPSVASVVS KGGLSTGVAS LSSTINPCGH LFRTAGDQPF  60
   61 NLSTVSSAFP MVSHPVFGLH SASSGHSEFG GLGTLGTPTA LAAHPQLASF PGAEWWRTTD 120
  121 AHTRTGATFF PPLLGIPPLF APPAQNHDSS SFHSRTSGKS NRNGPEKGVN GSINGSNTSS 180
  181 VIGINTSVLS TTASSSMGQT KSTSSGGGNR KCNQEQSKNQ PLDARVDKIK DKKPRKKAME 240
  241 SSSNSDSDSG TSSDTSSEGI SSSDSDDLEE DEEEEDQSIE ESEDDDSDSE SEAQHKSNNQ 300
  301 VLLHGISDPK ADGQKATEKA QEKRIHQPLP LASESQTHSF QSQQKQPQVL SQQLPFIFQS 360
  361 SQAKEESVNK HTSVIQSTGL VSNVKPLSLV NQAKKETYMK LIVPSPDVLK AGNKNTSEES 420
  421 SSLTSESRSK REQYKQAFPS QLKKQESSKS LKKVIAALSN PKATSSSPAH PKQTLENNHP 480
  481 NPFLTNALLG NHQPNGVIQS VIQEAPLALT TKTKMQSKIN ENIAAASSTP FSSPVNLSTS 540
  541 GRRTPGNQTP VMPSASPILH SQGKEKAVSN NVNPVKTQHH SHPAKSLVEQ FRGTDSDIPS 600
  601 SKDSEDSNED EEEDDEEEDE EDDEDDESDD SQSESDSNSE SDTEGSEEED DDDKDQDESD 660
  661 SDTEGEKTSM KLNKTTSSVK SPSMSLTGHS TPRNLHIAKA PGSAPAALCS ESQSPAFLGT 720
  721 SSTLTSSPHS GTSKRRRVTD ERELRIPLEY GWQRETRIRN FGGRLQGEVA YYAPCGKKLR 780
  781 QYPEVIKYLS RNGIMDISRD NFSFSAKIRV GDFYEARDGP QGMQWCLLKE EDVIPRIRAM 840
  841 EGRRGRPPNP DRQRAREESR MRRRKGRPPN VGNAEFLDNA DAKLLRKLQA QEIARQAAQI 900
  901 KLLRKLQKQE QARVAKEAKK QQAIMAAEEK RKQKEQIKIM KQQEKIKRIQ QIRMEKELRA 960
  961 QQILEAKKKK KEEAANAKLL EAEKRIKEKE MRRQQAVLLK HQERERRRQH MMLMKAMEAR1020
 1021 KKAEEKERLK QEKRDEKRLN KERKLEQRRL ELEMAKELKK PNEDMCLADQ KPLPELPRIP1080
 1081 GLVLSGSTFS DCLMVVQFLR NFGKVLGFDV NIDVPNLSVL QEGLLNIGDS MGEVQDLLVR1140
 1141 LLSAAVCDPG LITGYKAKTA LGEHLLNVGV NRDNVSEILQ IFMEAHCGQT ELTESLKTKA1200
 1201 FQAHTPAQKA SVLAFLINEL ACSKSVVSEI DKNIDYMSNL RRDKWVVEGK LRKLRIIHAK1260
 1261 KTGKRDTSGG IDLGEEQHPL GTPTPGRKRR RKGGDSDYDD DDDDDSDDQG DEDDEDEEDK1320
 1321 EDKKGKKTDI CEDEDEGDQA ASVEELEKQI EKLSKQQSQY RRKLFDASHS LRSVMFGQDR1380
 1381 YRRRYWILPQ CGGIFVEGME SGEGLEEIAK EREKLKKAES VQIKEEMFET SGDSLNCSNT1440
 1441 DHCEQKEDLK EKDNTNLFLQ KPGSFSKLSK LLEVAKMPPE SEVMTPKPNA GANGCTLSYQ1500
 1501 NSGKHSLGSV QSTATQSNVE KADSNNLFNT GSSGPGKFYS PLPNDQLLKT LTEKNRQWFS1560
 1561 LLPRTPCDDT SLTHADMSTA SLVTPQSQPP SKSPSPTPAP LGSSAQNPVG LNPFVLSPLQ1620
 1621 VKGGVSMMGL QFCGWPTGVV TSNIPFTSSV PSLGSGLGLS EGNGNSFLTS NVASSKSESP1680
 1681 VPQNEKATSA QPAAVEVAKP VDFPSPKPIP EEMQFGWWRI IDPEDLKALL KVLHLRGIRE1740
 1741 KALQKQIQKH LDYITQACLK NKDVAIIELN ENEENQVTRD IVENWSVEEQ AMEMDLSVLQ1800
 1801 QVEDLERRVA SASLQVKGWM CPEPASERED LVYFEHKSFT KLCKEHDGEF TGEDESSAHA1860
 1861 LERKSDNPLD IAVTRLADLE RNIERRYLKS PLSTTIQIKL DNVGTVTVPA PAPSVSGDGD1920
 1921 GIEEDIAPGL RVWRRALSEA RSAAQVALCI QQLQKSIAWE KSIMKVYCQI CRKGDNEELL1980
 1981 LLCDGCDKGC HTYCHRPKIT TIPDGDWFCP AALLSILAIY HSSSKLGDIR SVISFKPFYA2040
 2041 SGQTLKIKKL HVKGKKTNES KKGKKVTLTG DTEDEDSAST SSSLKRGNKD LKKRKMEENT2100
 2101 SINLSKQESF TSVKKPKRDD SKDLALCSCK VWILISNIIF FSMILTEMET HEDAWPFLLP2160
 2161 VNLKLVPGYK KVIKKPMDFS TIREKLSGGQ YPNLETFALD VRLVFDNCET FNEDDSDIGR2220
 2221 AGHNMRKYFE KKWTDTFKVS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle