YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5881413, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.45
Transmembrane Helix	12	27	0.40
Non-Cytoplasmic	28	39	0.54
Transmembrane Helix	40	60	0.75
Cytoplasmic	61	67	0.52
Transmembrane Helix	68	92	0.82
Non-Cytoplasmic	93	107	0.54
Transmembrane Helix	108	130	0.81
Cytoplasmic	131	261	0.54
Transmembrane Helix	262	282	0.78
Non-Cytoplasmic	283	287	0.68
Transmembrane Helix	288	310	0.87
Cytoplasmic	311	317	0.77
Transmembrane Helix	318	341	0.83
Non-Cytoplasmic	342	347	0.75
Transmembrane Helix	348	369	0.83
Cytoplasmic	370	387	0.76
Transmembrane Helix	388	409	0.82
Non-Cytoplasmic	410	416	0.61
Transmembrane Helix	417	437	0.79
Cytoplasmic	438	470	0.84
Transmembrane Helix	471	492	0.87
Non-Cytoplasmic	493	506	0.67
Transmembrane Helix	507	528	0.87
Cytoplasmic	529	541	0.84
Transmembrane Helix	542	571	0.78
Non-Cytoplasmic	572	634	0.69
Transmembrane Helix	635	661	0.78
Cytoplasmic	662	671	0.57
Transmembrane Helix	672	694	0.87
Non-Cytoplasmic	695	729	0.59
Transmembrane Helix	730	752	0.69
Cytoplasmic	753	757	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLTAAAPR PGVLLLLLSI LHPSRPGGVP GAIPGGVPGG VFYPGAGLGA LGGGALGPGG  60
   61 KPLKPVPGGL AGAGLGAGLG AFPAVTFPGA LVPGGVADAA AAYKAAKAGA GLGGVPGVGG 120
  121 LGVSAGAVVP QPGAGVKPGK VPGVGLPGVY PGGVLPGARF PGVGVLPGVP TGAGVKPKAP 180
  181 GVGGAFAGIP GVGPFGGPQP GVPLGYPIKA PKLPGGYGLP YTTGKLPYGY GPGGVAGAAG 240
  241 KAGYPTGTGV GPQAAAAAAA KAAAKFGAGA AGVLPGVGGA GVPGVPGAIP GIGGIAGVGT 300
  301 PAAAAAAAAA AKAAKYGAAA GLVPGGPGFG PGVVGVPGAG VPGVGVPGAG IPVVPGAGIP 360
  361 GAAVPGVVSP EAAAKAAAKA AKYGARPGVG VGGIPTYGVG AGGFPGFGVG VGGIPGVAGV 420
  421 PSVGGVPGVG GVPGVGISPE AQAAAAAKAA KYGVGTPAAA AAKAAAKAAQ FGLVPGVGVA 480
  481 PGVGVAPGVG VAPGVGLAPG VGVAPGVGVA PGVGVAPGIG PGGVAAAAKS AAKVAAKAQL 540
  541 RAAAGLGAGI PGLGVGVGVP GLGVGAGVPG LGVGAGVPGF GAGADEGVRR SLSPELREGD 600
  601 PSSSQHLPST PSSPRVPGAL AAAKAAKYGA AVPGVLGGLG ALGGVGIPGG VVGAGPAAAA 660
  661 AAAKAAAKAA QFGLVGAAGL GGLGVGGLGV PGVGGLGGIP PAAAAKAAKY GAAGLGGVLG 720
  721 GAGQFPLGGV AARPGFGLSP IFPGGACLGK ACGRKRK