YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3694661
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVRLSVHA KWIMGKVTGT KMQKTAKVRV IRLVLDPHLL KYYNKQKTYF AHNALQQCTI  60
   61 GDIVLLKALP VPRTKHVKHE LAEIVFKVGK LVDPVTGKPC AGTTYLESPL SSETTQGVDG 120
  121 ASRPSRGPAP CRAGPGARHL RPWPESPRPE PRGLPGPGRG SMATWRRDGR LTGGQRLLCA 180
  181 GLAGTLSLSL TAPLELATVL AQVGVVRGHA RGPWATGHRV WRAEGLRALW KGNAVACLRL 240
  241 FPCSAVQLAA YRKFVVLFTD DLGHISQWSS IMAGSLAGMV STIVTYPTDL IKTRLIMQNI 300
  301 LEPSYRGLLH AFSTIYQQEG FLALYRGVSL TVVGALPFSA GSLLVYMNLE KIWNGPRDQF 360
  361 SLPQNFANVC LAAAVTQTLS FPFETVKRKM Q

Type	Start	End	Confidence
Cytoplasmic	1	176	0.84
Transmembrane Helix	177	194	0.59
Non-Cytoplasmic	195	267	0.59
Transmembrane Helix	268	288	0.87
Cytoplasmic	289	321	0.86
Transmembrane Helix	322	346	0.82
Non-Cytoplasmic	347	363	0.75
Transmembrane Helix	364	383	0.74
Cytoplasmic	384	391	0.78